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Apis mellifera
cluster # 808 cluster # 808       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_808#0 length = 437 sequences # 2  
 consensus_808#1 length = 193 sequences # 1  
consensusID : consensus_808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 437
fasta sequence 
                              [TTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTGAAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAGATTGAAGGTAGCGAATATCCTGCTCTCATAACAGAACATAATGATCTAGGTGGGCAAAGGTTTTATGATGCTCGTAGTAAGCAAAGTTTTAAATATGACCATCTTAGAAAAGAAGCACAGGATTATGAACCATATGAACCNNATTCTGTGGCTGAACCTTGGAGATCAGCTCTTCAAGATGAAATAACAACTTATACTCAAAGTCATTATAGACATGGTGCATGTTCAGTCTTTGGAAAGAGTCAAGGAGGTAACATTACCTTAACGGCTTGCATAGAAGATCATCAGTTTCAACCTAAAAATTTTTGGAATGGCCGTTGGCGTTCTGTATGGA]

[+] EMBL BI512092             [TTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTGAAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAGATTGAAGGTAGCGAATATCCTGCTCTCATAACAGAACATAATGATCTAGGTGGGCAAAGGTTTTATGATGCTCGTAGTAAGCAAAGTTTTAAATATGACCATCTTAGAAAAGAAGCACAGGATTATGAACCATATGAACCAGATTCTGTGGCTGAACCTTGGAGATCAGCTCTTCAAGATGAAATAACAACTTATACTCAAAGTCATTATAGACATGGTGCATGTTCAGTCTTTGGAAAGAGTCAAGGAGGTAACATTACCTTAACGGCTTGCATAGAAGATCATCAGTTTCAACCTAAAAATTTTTGGAATGGCCGTTGGCGTTCTGTATGGA]
[+] EMBL BI512718             [TTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTGAAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAGATTGAAGGTAGCGAATATCCTGCTCTCATAACAGAACATAATGATCTAGGTGGGCAAAGGTTTTATGATGCTCGTAGTAAGCAAAGTTTTAAATATGACCATCTTAGAAAAGAAGCACAGGATTATGAACCATATGAACCNNATTCTGTGGCTGAACCTTGGAGATCAGCTCTTCAAGATGAAATAACAACTTATACTCAAAGTCATTATAGACATGGTGCATGTTCAGTCTTTGGAAAGAGTCAAGGAGGTAACATTACCTTAACGGCTTGCATAGAAGATCATCAGTTTCAACCTAAAAATTTTTGGAATGGCCGTTGGCGTTCTGTATG  ]




>consensus_808#0
TTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTGAAGGAGGGTGCGTCTGG
AGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAGATTGAAGGTAGCGAATA
TCCTGCTCTCATAACAGAACATAATGATCTAGGTGGGCAAAGGTTTTATGATGCTCGTAG
TAAGCAAAGTTTTAAATATGACCATCTTAGAAAAGAAGCACAGGATTATGAACCATATGA
ACCNNATTCTGTGGCTGAACCTTGGAGATCAGCTCTTCAAGATGAAATAACAACTTATAC
TCAAAGTCATTATAGACATGGTGCATGTTCAGTCTTTGGAAAGAGTCAAGGAGGTAACAT
TACCTTAACGGCTTGCATAGAAGATCATCAGTTTCAACCTAAAAATTTTTGGAATGGCCG
TTGGCGTTCTGTATGGA

consensusID : consensus_808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence 
                              [GGCGAATTCAACGAGGTTTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTGAAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAGGTACATCATCGACCTCTCTGATGAACTTTTATAATTTTTTGTGATAGTATCCGGGATATTGTCACAAAAAAAA]

[+] EMBL BI505316             [GGCGAATTCAACGAGGTTTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTGAAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAGGTACATCATCGACCTCTCTGATGAACTTTTATAATTTTTTGTGATAGTATCCGGGATATTGTCACAAAAAAAA]




>consensus_808#1
GGCGAATTCAACGAGGTTTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTG
AAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAG
GTACATCATCGACCTCTCTGATGAACTTTTATAATTTTTTGTGATAGTATCCGGGATATT
GTCACAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_808#0      -----------------TTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTG 43
consensus_808#1      GGCGAATTCAACGAGGTTTTTAATGATGTGAGAGTCTTGTTAAACAACGACAACCTGTTG 60
                                      *******************************************

consensus_808#0      AAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAG 103
consensus_808#1      AAGGAGGGTGCGTCTGGAGCATTTGCTCAATACAACAAGGATCAGCTCACGCCTGTTAAG 120
                     ************************************************************

consensus_808#0      ATTGAAGGTAGCGAATATCCTGCTCTCATAACAGAACATAATGATCTAGGTGGGCAAAGG 163
consensus_808#1      GT--ACATCATCGA-----CCTCTCTGATGAACTTTTATAATTTTTTGTG-----ATAGT 168
                      *  *    * ***     *  **** ** *      *****  * *  *     * ** 

consensus_808#0      TTTTATGATGCTCGTAGTAAGCAAAGTTTTAAATATGACCATCTTAGAAAAGAAGCACAG 223
consensus_808#1      ATCCGGGATA-TTGTCACAAAAAAAA---------------------------------- 193
                      *    ***  * **   **  ***                                   

consensus_808#0      GATTATGAACCATATGAACCNNATTCTGTGGCTGAACCTTGGAGATCAGCTCTTCAAGAT 283
consensus_808#1      ------------------------------------------------------------
                                                                                 

consensus_808#0      GAAATAACAACTTATACTCAAAGTCATTATAGACATGGTGCATGTTCAGTCTTTGGAAAG 343
consensus_808#1      ------------------------------------------------------------
                                                                                 

consensus_808#0      AGTCAAGGAGGTAACATTACCTTAACGGCTTGCATAGAAGATCATCAGTTTCAACCTAAA 403
consensus_808#1      ------------------------------------------------------------
                                                                                 

consensus_808#0      AATTTTTGGAATGGCCGTTGGCGTTCTGTATGGA 437
consensus_808#1      ----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)