|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC]
[+] EMBL BI503404 [GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACG ]
[+] EMBL BI506692 [ GCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTAGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTAGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC]
consensusID : consensus_903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAGAATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT]
[+] EMBL BI506848 [GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAGAATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_903#0 ------------------------------------------------GCTCAAATTAAG 12
consensus_903#1 GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAG 60
************
consensus_903#0 ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT 72
consensus_903#1 ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT 120
************************************************************
consensus_903#0 CCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT 132
consensus_903#1 CCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT 180
******* **** *********************************************
consensus_903#0 GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCA 192
consensus_903#1 GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCA 240
************************************** ********************
consensus_903#0 GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG 252
consensus_903#1 GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG 300
************************************************************
consensus_903#0 GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGAT 312
consensus_903#1 GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTA-------TCAACCT 353
*************************************** * * ** *
consensus_903#0 GATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTT 372
consensus_903#1 GAGTCAATGGCTGTAATTGGTGCCTTTAA-----ATTGGCTGAGAAA-ACT--CTTGAAT 405
** ** * * * **** * ** *** ** * * *** **** *
consensus_903#0 GGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAA 432
consensus_903#1 AT-GATCCAAAAAAATTTGCAGAAACT--------CAAGGAAAATCTTCAAAGAAAGAGA 456
** * * ** *** ***** * * ** * * ***** * * *
consensus_903#0 TATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACA 492
consensus_903#1 AAAA---AGAAAAGGAATCTA---AAAAAGAATCAAAAG--AAATAAAGGAATCTAAAAA 508
* * * ** *** ** *** ******* **** * * * *** *
consensus_903#0 GTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACT 552
consensus_903#1 GGAAACCATTGAA--GATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACT 566
* * ** * ** * * * * * ** *** ** * ******
consensus_903#0 CTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC 599
consensus_903#1 ACAAATCCTTTT----------------------------------- 578
* * *
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |