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Apis mellifera
cluster # 922 cluster # 922       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_922#0 length = 461 sequences # 2  
 consensus_922#1 length = 402 sequences # 1  
consensusID : consensus_922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 461
fasta sequence 
                              [TTTTTTTTTTTATATATATATATATATACTTATCACGGAGATTACACGGATAAAACAATTGGAAAATTGATTGTTATCTAATTGCCTCGTAAACCGATAAACACCGAGTTTATACAACGGGTTTAATAGTTAAAAGAACGTAATATCTGATATCGAGAATCGGGAATTAATTACGATTATTTACATAGCGAAGGTAATTTCGAAATACAGAGCGGTCCATTATTGAACTTTGTAACTAATTAATTTCCCGACCTACGTGAATATAATCGGGNNNAATATAATTTTTGTAAATATTTTATTATCTCATCGCGTATATCACCTCTTCTCTTTTTAGTTGCATCGACGGACCATNNNGTAACGAATTATATATATTTCTTTATTTATCGAAAACGCACGTGAGCTTTGCATCATCAGTTTATCGTTTCTTTTATAAAATACGTTATAAACGATACGATATACAT]

[+] EMBL BI514132             [TTTTTTTTTTTATATATATATATATATACTTATCACGGAGATTACACGGATAAAACAATTGGAAAATTGATTGTTATCTAATTGCCTCGTAAACCGATAAACACCGAGTTTATACAACGGGTTTAATAGTTAAAAGAACGTAATATCTGATATCGAGAATCGGGAATTAATTACGATTATTTACATAGCGAAGGTAATTTCGAAATACAGAGCGGTCCATTATTGAACTTTGTAACTAATTAATTTCCCGACCTACGTGAATATAATCGGGGGGAATATAATTTTTGTAAATATTTTATTATCTCATCGCGTATATCACCTCTTCTCTTTTTAGTTGCATCGACGGACCATNNNGTAACGAATTATATATATTTCTTTATTTATCGAAAACGCACGTGAGCTTTGCATCATCAGTTTATCGTTTCTTTTATAAAATACG                      ]
[+] EMBL BI513982             [    TTTTTTTATATATATATATATATACTTATCACGGAGATTACACGGATAAAACAATTGGAAAATTGATTGTTATCTAATTGCCTCGTAAACCGATAAACACCGAGTTTATACAACGGGTTTAATAGTTAAAAGAACGTAATATCTGATATCGAGAATCGGGAATTAATTACGATTATTTACATAGCGAAGGTAATTTCGAAATACAGAGCGGTCCATTATTGAACTTTGTAACTAATTAATTTCCCGACCTACGTGAATATAATCGGGNNNAATATAATTTTTGTAAATATTTTATTATCTCATCGCGTATATCACCTCTTCTCTTTTTAGTTGCATCGACGGACCATTCTGTAACGAATTATATATATTTCTTTATTTATCGAAAACGCACGTGAGCTTTGCATCATCAGTTTATCGTTTCTTTTATAAAATACGTTATAAACGATACGATATACAT]




>consensus_922#0
TTTTTTTTTTTATATATATATATATATACTTATCACGGAGATTACACGGATAAAACAATT
GGAAAATTGATTGTTATCTAATTGCCTCGTAAACCGATAAACACCGAGTTTATACAACGG
GTTTAATAGTTAAAAGAACGTAATATCTGATATCGAGAATCGGGAATTAATTACGATTAT
TTACATAGCGAAGGTAATTTCGAAATACAGAGCGGTCCATTATTGAACTTTGTAACTAAT
TAATTTCCCGACCTACGTGAATATAATCGGGNNNAATATAATTTTTGTAAATATTTTATT
ATCTCATCGCGTATATCACCTCTTCTCTTTTTAGTTGCATCGACGGACCATNNNGTAACG
AATTATATATATTTCTTTATTTATCGAAAACGCACGTGAGCTTTGCATCATCAGTTTATC
GTTTCTTTTATAAAATACGTTATAAACGATACGATATACAT

consensusID : consensus_922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence 
                              [TATATTTCACTTCAATCGAATCTTGTTAACGAATCGATGGAAAAAAAAAATATATATATATATATATATACATGTACATGATTCTTTGATTTCAATTGATCGTTACGTAAAAATAAAAAGCAGATAAATAAATGAAAGGAAAAGAAGGAGACGAATAGCGAATTTATGGGAGTATGCCGAGTGCAGGTCTATCTCACGTGTCTCAGAATGTAGGGAACGAGTTTCCTGAGTGGTTTCCCGTGTTCACTATTGCTATGTACACACAAATGCATCAAATACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATACACGTTTTATATTTCATATGTATATCGTATCGTTTATAACGTATTTTATAAAAGAAACGATAAACTGATGATGCAAAAAAAA]

[+] EMBL BI509314             [TATATTTCACTTCAATCGAATCTTGTTAACGAATCGATGGAAAAAAAAAATATATATATATATATATATACATGTACATGATTCTTTGATTTCAATTGATCGTTACGTAAAAATAAAAAGCAGATAAATAAATGAAAGGAAAAGAAGGAGACGAATAGCGAATTTATGGGAGTATGCCGAGTGCAGGTCTATCTCACGTGTCTCAGAATGTAGGGAACGAGTTTCCTGAGTGGTTTCCCGTGTTCACTATTGCTATGTACACACAAATGCATCAAATACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATACACGTTTTATATTTCATATGTATATCGTATCGTTTATAACGTATTTTATAAAAGAAACGATAAACTGATGATGCAAAAAAAA]




>consensus_922#1
TATATTTCACTTCAATCGAATCTTGTTAACGAATCGATGGAAAAAAAAAATATATATATA
TATATATATACATGTACATGATTCTTTGATTTCAATTGATCGTTACGTAAAAATAAAAAG
CAGATAAATAAATGAAAGGAAAAGAAGGAGACGAATAGCGAATTTATGGGAGTATGCCGA
GTGCAGGTCTATCTCACGTGTCTCAGAATGTAGGGAACGAGTTTCCTGAGTGGTTTCCCG
TGTTCACTATTGCTATGTACACACAAATGCATCAAATACTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTATGTATACACGTTTTATATTTCATATGTATATCGTATCGTTTATAAC
GTATTTTATAAAAGAAACGATAAACTGATGATGCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_922#0      TTTTTTTTTTTATATATATATATATATACTTATCACGGAGATTACACGGATAAAACAATT 60
consensus_922#1      ------------------------------------------------------------
                                                                                 

consensus_922#0      GGAAAATTGATTGTTATCTAATTGCCTCG-TAAACCGATAAACACCGAGTTTATACAACG 119
consensus_922#1      -TATATTTCACTTCAATCGAATCTTGTTAACGAATCGATGGAAAAAAAAAATATATA-TA 58
                       * * ** * *   *** ***    *     ** ****  * *   *   **** *   

consensus_922#0      GGTTTAATAGTTAAAAGAACGTAATA-TCTGATATCGAGAATCGGGAATTAATTACGATT 178
consensus_922#1      TATATA-TATATACATGTACATGATTCTTTGATTTC---AATTGATCGTTACGTAAAAAT 114
                       * ** **  ** * * ** * **  * **** **   *** *    ***  **  * *

consensus_922#0      ATTTACATAGCGAAGGTAATTTCGAAATACAGAGCGGTCCATTATTGAACTTTGTAACTA 238
consensus_922#1      AAA-AAGCAGATAAATAAATGAAAGGAAAAGAAGGAGACGAATAGCGAA-TTTATGGG-- 170
                     *   *   **  **   ***      * *   **  * * * **  *** *** *     

consensus_922#0      ATTAATTTCCCGACCTACGTGAATATAATCGGGNNNAATATAATTTTTGTAAATATTTTA 298
consensus_922#1      ---AGTATGCCGAG-TGCAGGTCTATC-TCACGTGTCTCAGAATGTAGGGAACGAGTTTC 225
                        * * * ****  * *  *  ***  **  *      * *** *  * **  * *** 

consensus_922#0      TTATCTCATCGCGTATATCACCTCTTCTCTTTTTAGTTGCATCGACGGACCATNNNGTAA 358
consensus_922#1      CTGAGTGGTTTCCCGTGTTCACTATTG-CTATGTA--CACACAAATGCATCAAATACTTG 282
                      *   *  *  *   * *   ** **  ** * **    **   * * * **     *  

consensus_922#0      CGAAT-TATATATATTTCTTTATTTAT-CGAAAACGCACGTGAGCTTTGCATCATCAGTT 416
consensus_922#1      TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATACACGTTTTATATTTCATATGTA 342
                      *  * * * * * * * * * * * *  * *     **  *   * *   ****  ** 

consensus_922#0      TATCGTTTCTTTTATAAAATACGTTATAAACGATACGATATACAT--------------- 461
consensus_922#1      TATCGTATCGTTTATAACGTATTTTATAAAAGAAACGATAAACTGATGATGCAAAAAAAA 402
                     ****** ** *******  **  ******* ** ****** **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)