cluster # 931

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 931 cluster # 931 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_931#0 length = 565 sequences # 1

consensus_931#1 length = 484 sequences # 1
consensus_931#2 length = 364 sequences # 1

consensusID : consensus_931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAGGACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAGCTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTCAGACTAGCTGCAATTACGGCTCTGGTGATCATGGCCTGGCTTTTGGCTTGTCTAGGCCTCCTTGGATTGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAGACATGCGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATCACCTGAAGGTCAAAGGTCGTAGAGCAGAATCAAAGGATGCCCCCGTGTTAGCCCTAGCCCCGCATTCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGTCGCCAAAGCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCAC]

[+] EMBL BI510292             [TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAGGACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAGCTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTCAGACTAGCTGCAATTACGGCTCTGGTGATCATGGCCTGGCTTTTGGCTTGTCTAGGCCTCCTTGGATTGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAGACATGCGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATCACCTGAAGGTCAAAGGTCGTAGAGCAGAATCAAAGGATGCCCCCGTGTTAGCCCTAGCCCCGCATTCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGTCGCCAAAGCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCAC]




>consensus_931#0
TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAG
GACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAG
CTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTC
AGACTAGCTGCAATTACGGCTCTGGTGATCATGGCCTGGCTTTTGGCTTGTCTAGGCCTC
CTTGGATTGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAGACATG
CGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATCACCTG
AAGGTCAAAGGTCGTAGAGCAGAATCAAAGGATGCCCCCGTGTTAGCCCTAGCCCCGCAT
TCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGTCGCCAAA
GCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACCAGTCTAT
GTTTGGAGAGAAGATCCGAATTCAC

consensusID : consensus_931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [TATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTTTCCCGAAGGTACTTGTACAAATCGATCGTGTCTTATTACTTTCAAATCGGGAGCATTTTATCCCGGTGTTCCTGTTCAGCCTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAACGTGGACCTGGGAAGGTCCTGGAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAATAGCAGTTGTGAGATAGAGTTCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACAGATCCTAAACTTTATGCAAATAACGTACGACGTCTTATGGCGGAAGCGTTACAAATTCCTGTATCAGATTATACGTATGACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACCACGG]

[+] EMBL BI511392             [TATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTTTCCCGAAGGTACTTGTACAAATCGATCGTGTCTTATTACTTTCAAATCGGGAGCATTTTATCCCGGTGTTCCTGTTCAGCCTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAACGTGGACCTGGGAAGGTCCTGGAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAATAGCAGTTGTGAGATAGAGTTCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACAGATCCTAAACTTTATGCAAATAACGTACGACGTCTTATGGCGGAAGCGTTACAAATTCCTGTATCAGATTATACGTATGACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACCACGG]




>consensus_931#1
TATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATAC
GATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTT
TCCCGAAGGTACTTGTACAAATCGATCGTGTCTTATTACTTTCAAATCGGGAGCATTTTA
TCCCGGTGTTCCTGTTCAGCCTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAAC
GTGGACCTGGGAAGGTCCTGGAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAA
TAGCAGTTGTGAGATAGAGTTCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACAGA
TCCTAAACTTTATGCAAATAACGTACGACGTCTTATGGCGGAAGCGTTACAAATTCCTGT
ATCAGATTATACGTATGACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACC
ACGG

consensusID : consensus_931#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [GACATATGAGTGACGTTGAAAATTAATTTATTGCATGTTTTTTTATTTTTCCGTTTGTTTTATATATATATATATGTATGTATATATATATATATATGTATGTATGTATATACGTATGTATATATGTATGTACGTATGTCGTATGTATGTATGTATACATATATTTTTCTATCCCACGCTCNNNNNACTTATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTATCATTAACAAAGAAAACATTTTTTGTAAAAATCAAGATAGATAAAATTTTTTTTTATTTTAAT]

[+] EMBL BI505594             [GACATATGAGTGACGTTGAAAATTAATTTATTGCATGTTTTTTTATTTTTCCGTTTGTTTTATATATATATATATGTATGTATATATATATATATATGTATGTATGTATATACGTATGTATATATGTATGTACGTATGTCGTATGTATGTATGTATACATATATTTTTCTATCCCACGCTCNNNNNACTTATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTATCATTAACAAAGAAAACATTTTTTGTAAAAATCAAGATAGATAAAATTTTTTTTTATTTTAAT]




>consensus_931#2
GACATATGAGTGACGTTGAAAATTAATTTATTGCATGTTTTTTTATTTTTCCGTTTGTTT
TATATATATATATATGTATGTATATATATATATATATGTATGTATGTATATACGTATGTA
TATATGTATGTACGTATGTCGTATGTATGTATGTATACATATATTTTTCTATCCCACGCT
CNNNNNACTTATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACG
ACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGT
ATCATTAACAAAGAAAACATTTTTTGTAAAAATCAAGATAGATAAAATTTTTTTTTATTT
TAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_931#1      -------------------------------------TATCAACTATACGCAACCAGTCT 23
consensus_931#2      ------------------------------------------------------------
consensus_931#0      TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAG 60
                                                                                 

consensus_931#1      ATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGG 83
consensus_931#2      ------------------------------------------------------------
consensus_931#0      GACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAG 120
                                                                                 

consensus_931#1      CTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTTTCCCGAAGGTACTTGTACAAATC 143
consensus_931#2      ------------------------GACATATGAGTGACGTTGAAAATTAATTTATTGCAT 36
consensus_931#0      CTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTC 180
                                                     * *                 **      

consensus_931#1      -GATCGTGTCTTATTACTTTCAAATCGGGAGCAT-TTTATCCCGGTGTTCCTGTTCA-GC 200
consensus_931#2      -GTTTTTTTATTTTTCCGTTTGTTTTATATATATATATATGTATGTATATATATATATAT 95
consensus_931#0      AGACTAGCTGCAATTACGGCT--CTGGTGATCAT-GGCCTGGCTTTTGGCTTGTCTAGGC 237
                      *      *    ** *       *       **     *     *     * *  *   

consensus_931#1      CTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAACGTGGACCTGGGAAGGTCCTG 260
consensus_931#2      ATGTATGTAT-GTATATACGTATGTATATATGTATGTACGTATGTCGTATGTATGTATGT 154
consensus_931#0      CTCCTTGGAT--TGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAG 295
                      *   ** **    *      *             * *     * *        *     

consensus_931#1      GAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAATAGCAGTTGTGAGATAGAGT 320
consensus_931#2      ATACAT--ATATTTTTCTATCCCACGCTCNNNNNACTTATCAACTATACGCAACCAGTCT 212
consensus_931#0      ACATGCGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATC 355
                             *   *  * *     * * *      * *    * *                

consensus_931#1      TCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACA-GATCCTAAACTTTATGCAAAT 379
consensus_931#2      ATGTTTGGAGAGAAGATCCGAATTCA--CGACAAAATACGATTAAGGAAATTATCGAAAG 270
consensus_931#0      ACCTGAAGGTCAAAGGTCGTAGAGCAG--AATCAAAGGATGCCCCCGTGTTAGCCCTAGC 413
                        *        *    *  *    *    *  ***              *      *  

consensus_931#1      AACGTACGACGTCTT--ATGGCGGAAGCGTTACAAATTCCTGTATCAGATTATACGTATG 437
consensus_931#2      GGC-TACTTCG------AAAGAGGATTGGCCACAGGTATCATTAACAAAGAAAACATTTT 323
consensus_931#0      CCCGCATTCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGT 473
                       *  *                * *           *  *     *  *     * *   

consensus_931#1      ACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACCACGG------------- 484
consensus_931#2      TTGTAAAAATCAAGATAGATAAAATTTTTTT-TTATTTTAAT------------------ 364
consensus_931#0      CGCCAAAGCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACC 533
                                *          *     *                               

consensus_931#1      --------------------------------
consensus_931#2      --------------------------------
consensus_931#0      AGTCTATGTTTGGAGAGAAGATCCGAATTCAC 565

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)