cluster # 933

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Apis mellifera
cluster # 933 cluster # 933 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_933#0 length = 501 sequences # 1

consensus_933#1 length = 494 sequences # 1
consensus_933#2 length = 172 sequences # 1

consensusID : consensus_933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGGTGTTTCTTTAACTACTTCTTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAACAGCAGCAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAATTTGATTATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTAACTATTGGGCCTGTGGAATCTTGTCGT]

[+] EMBL BI504734             [GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGGTGTTTCTTTAACTACTTCTTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAACAGCAGCAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAATTTGATTATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTAACTATTGGGCCTGTGGAATCTTGTCGT]




>consensus_933#0
GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGAT
GGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAAC
GTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATAC
GGTGTTTCTTTAACTACTTCTTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCGCAC
AACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTA
GATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAACAGCAG
CAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAATTTGATT
ATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTAACTATT
GGGCCTGTGGAATCTTGTCGT

consensusID : consensus_933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [GTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGNNGTTTCTTTAACTACTTCTTTTCCACTTTGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAGTGCAGGCAGAGCAACGATCATGGCATTGCACGGGGAAAACGTAGTAATGATTTTGTTTATATTTTTTGTATTTGCTGACCCCATCAACGATTATCCTGGGACATATCAGTTGGAGTACGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCA]

[+] EMBL BI516964             [GTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGNNGTTTCTTTAACTACTTCTTTTCCACTTTGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAGTGCAGGCAGAGCAACGATCATGGCATTGCACGGGGAAAACGTAGTAATGATTTTGTTTATATTTTTTGTATTTGCTGACCCCATCAACGATTATCCTGGGACATATCAGTTGGAGTACGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCA]




>consensus_933#1
GTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATT
AGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCT
CTTTTCGTCGATCTTTTCCCACTATATACGNNGTTTCTTTAACTACTTCTTTTCCACTTT
GGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACC
GCTTAAAGAAAGTGAGAGCATTCAAAAGTGCAGGCAGAGCAACGATCATGGCATTGCACG
GGGAAAACGTAGTAATGATTTTGTTTATATTTTTTGTATTTGCTGACCCCATCAACGATT
ATCCTGGGACATATCAGTTGGAGTACGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTA
GCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCT
AAAATGACAGATCA

consensusID : consensus_933#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [GGTGTTGTGTTTCACACACGCTCGAAATGGCTACAAACGAACAAAACGAAGATACGCAAAATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAAAAA]

[+] EMBL BI509907             [GGTGTTGTGTTTCACACACGCTCGAAATGGCTACAAACGAACAAAACGAAGATACGCAAAATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAAAAA]




>consensus_933#2
GGTGTTGTGTTTCACACACGCTCGAAATGGCTACAAACGAACAAAACGAAGATACGCAAA
ATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTATATATGCAGATTT
ATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_933#1      -------------------------------GTGTGATAACAAAGTGTGCATGATTCGAT 29
consensus_933#2      ------------------------------------------------------------
consensus_933#0      GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGAT 60
                                                                                 

consensus_933#1      GGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAAC 89
consensus_933#2      ------------------------------------------------------------
consensus_933#0      GGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAAC 120
                                                                                 

consensus_933#1      GTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATAC 149
consensus_933#2      ----------GGTGTTGTGTTTCACAC-ACGCTCGAAATGGCTACAAACGAACAAAA--C 47
consensus_933#0      GTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATAC 180
                                ***      * ** **  * **     * * *     *  ** * *  *

consensus_933#1      GNNGTTTCTTTAACTACTTC---TTTTCCACTTTGGTCTGGCATCATATACATATATGTA 206
consensus_933#2      GAAGATACGCAAAATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTA 107
consensus_933#0      GGTGTTTCTTTAACTACTTC---TTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCG 237
                     *  * * *   ** ** *     ** ** * *  * *   * *      *   * *    

consensus_933#1      TATA-TGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAA 265
consensus_933#2      TATA-TGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAA 166
consensus_933#0      CACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAA---TCAG 294
                      * *   ** * **  *  *     **   **** **  **  *** *   *    *** 

consensus_933#1      AAGTGCAGGCAGAGCAACGATCATGGCATTGCACGGGGAAAACGTAGTAATGATTTTGTT 325
consensus_933#2      AAAAAA------------------------------------------------------ 172
consensus_933#0      AAAGTAGATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAA 354
                     **                                                          

consensus_933#1      TATATTTTTTGTATTTGCTGACCCCATCAACGATTATCCTGGGACATATCAGTTGGAGTA 385
consensus_933#2      ------------------------------------------------------------
consensus_933#0      CAGCAGCAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAAT 414
                                                                                 

consensus_933#1      CGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATC 445
consensus_933#2      ------------------------------------------------------------
consensus_933#0      TTGATTATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTA 474
                                                                                 

consensus_933#1      AAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCA 494
consensus_933#2      -------------------------------------------------
consensus_933#0      ACTATTGGGCCTGTGGAATCTTGTCGT---------------------- 501

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)