cluster # 10048

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Oryza sativa
cluster # 10048 cluster # 10048 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10048#0 length = 1498 sequences # 4

consensus_10048#1 length = 482 sequences # 2
consensus_10048#2 length = 355 sequences # 1

consensusID : consensus_10048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1498
fasta sequence

                              [GAGACAGCTTAGCTTAGCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGGCACTGCACCGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATGGGGTGGTGGCTCGGAGGTGGCCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTGTCGCTCGTCAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAGCAGCTCACGGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAAGAGAGGAAGTCCAGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACTGCCATCTCCAATATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTAACACGGTCAGAATCACTGAACCTGAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACGCTGATATCAGTAGCAGGAGCCATGGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCACACAACCAAGATCCACCATGCAACAGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGCAGCAGGAACTGGACGCTGGGCACGGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGCTGGTTCCTCCTCCACAGCAGGCTCGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCCTTCATGTGCATGTTCAGCTTCCTCCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAACGTCTCCGTCTGGATCGTCAGGACCAAGTTCCACATACTCACCATCC-TCTACGCCGGTGTGGTGGGGTGTGGCCTTTCGTTTGTGCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTCTACGTGTGATTTATGGATAAACCGTGTAATTCCATGACTTCTGCGAGTTTACAAAAAAA]

[+] EMBL AK100838             [GAGACAGCTTAGCTTAGCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGGCACTGCACCGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATGGGGTGGTGGCTCGGAGGTGGCCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTGTCGCTCGTCAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAGCAGCTCACGGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAAGAGAGGAAGTCCAGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACTGCCATCTCCAATATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTAACACGGTCAGAATCACTGAACCTGAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACGCTGATATCAGTAGCAGGAGCCATGGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCACACAACCAAGATCCACCATGCAACAGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGCAGCAGGAACTGGACGCTGGGCACGGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGCTGGTTCCTCCTCCACAGCAGGCTCGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCCTTCATGTGCATGTTCAGCTTCCTCCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAACGTCTCCGTCTGGATCGTCAGGACCAAGTTCCACATACTCACCATCC TCTACGCCGGTGTGGTGGGGTGTGGCCTTTCGTTTGTGCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTCTACGTGTGATTTATGGATAAACCGTG                                 ]
[+] EMBL AK107585             [   ACAGCTTAGCGTAGCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGGCACTGCACCGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATGGGGTGGTGGCTCGGAGGTGGCCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTGTCGCTCGTCAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAGCAGCTCACGGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAAGAGAGGAAGTCCAGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACTGCCTTCTCCAATATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTAACAC     GAATCACTGAACCTGAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACGCTGATATCAGTAGCAGGAGCCATGGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCACACAACCAAGATCCACCATGCAACAGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGCAGCAGGAACTGGACGCTGGGCACGGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGCTGGTTCCTCCTCCACAGCAGGCTCGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCCTTCATGTGCATGTTCAGCTTCCTCCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAACGTCTCCGTCTGGATCGTCAGGACCAAGTTCCACATACTCACCATCC TCTACGCCGGTGTGGTGGGGTGTGGCCTTTCGTTTGTGCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTCTACGTGTAATTTATGGATAAACCGTG                                 ]
[+] EMBL AU078644             [                GCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGGCACTGCACCGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATNGGGTGGTGGCTCGGAGGTGGCCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTGTCGCTCGTCAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAGCAGCTCACGGCCGCCATCTTCCTCGGCCCAATTNCCTACTTCAAAGAGAGGAAGTCCAGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU078645             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CACATNCTCACCATCCTTTTACCCCGTTTTGGTGGGGTNTGCCTTTTCGTTTGTGCTACTGACATGGTGCATCGAGAAGCNCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGTGGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCNTTGCACCTCCCTCCNAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCANCAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTCTACGTGTGATTTATGGATAAACCGTGTAATTCCATGACTTCTGCGAGTTTACAAAAAAA]




>consensus_10048#0
GAGACAGCTTAGCTTAGCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGGCACTGCAC
CGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATGGGGTGGTGGCTCGGAGGTGG
CCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTGTCGCTCGT
CAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAGCAGCTCAC
GGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAAGAGAGGAAGTCCAGGCCAAAGCT
CACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGGCAGCTCTAAGGCA
GTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACTGCCATCTCCAA
TATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTAACACGGTCAGAATCACTGAACCT
GAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACGCTGATATCAGTAGCAGGAGCCAT
GGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCACACAACCAAGATCCACCATGCAAC
AGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGCAGCAGGAACTGGACGCTGGGCAC
GGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGCTGGTTCCTCCTCCACAGCAGGCT
CGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCCTTCATGTGCATGTTCAGCTTCCT
CCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAACGTCTCCGTCTGGATCGTCAGGAC
CAAGTTCCACATACTCACCATCCTCTACGCCGGTGTGGTGGGGTGTGGCCTTTCGTTTGT
GCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGT
GGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTCTTCCTTGG
AAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAG
GCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCA
ACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGG
TGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCA
ATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATT
TAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAG
CTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTCT
ACGTGTGATTTATGGATAAACCGTGTAATTCCATGACTTCTGCGAGTTTACAAAAAAA

consensusID : consensus_10048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 482
fasta sequence

                              [CGCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTG-CAACCATATAAGAATTCTACGTGTGATTTATGGATAAAAAAAAAAAAAAAAAANA]

[+] EMBL AU030746             [CGCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTG CAACCATATAAGAATTCTACGTGTGATTTATGGATAAAAAAAAAAAAAAAAAANA]
[+] EMBL AU078707             [            anCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGANATGATCTAAACCCACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCCATAGTTTAACTGCCACCCATATAAGAATTCTACGTGTGA                             ]




>consensus_10048#1
CGCTCCATGAACAGCTCTTCCTTGGAAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCC
TTTATCTTCTGCTGTGGGGCAAGAGGCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTG
AACATGATAAAGAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAGCAGC
AAGTGCAACTCTGAATGAAGAGTGGTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGT
TCTCCACCAACTTTTTTTTTTGTCAATCAGGGCAGCCATGTTGTTGTACAATTAATCCGA
GAGCACTATCATGCATGAAGTTATTTAGGTTTTAATTGATCCAAAGAATACTAGAAATGA
TCTAAACCAACACTGAGTTAATTAGCTACCACTTCAGAAATAGATCCTGTATGCAATAGT
TTAACTGCAACCATATAAGAATTCTACGTGTGATTTATGGATAAAAAAAAAAAAAAAAAA
NA

consensusID : consensus_10048#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [AGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGTACCAATTCAATTCATACGAATTTTGCCTCTAGTTTAATTTTCTTCTTCTTTTGCTCTTGAAGAAAAAACAAATTCATCTCCCGGCGAAAAAACAAATTCATGGCTTTACTAAGTTGTTCTTCTCTCTTGTTCTTGCAGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACNGGCCTTCTCCAATATCGCTCCTGTNCTCACATTCTTGCTTGCCATCCTAACACGGTAGGTTCTTGATTGGAAGACCCAATAAATTCTGAATTATG]

[+] EMBL C72841               [AGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGTACCAATTCAATTCATACGAATTTTGCCTCTAGTTTAATTTTCTTCTTCTTTTGCTCTTGAAGAAAAAACAAATTCATCTCCCGGCGAAAAAACAAATTCATGGCTTTACTAAGTTGTTCTTCTCTCTTGTTCTTGCAGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACNGGCCTTCTCCAATATCGCTCCTGTNCTCACATTCTTGCTTGCCATCCTAACACGGTAGGTTCTTGATTGGAAGACCCAATAAATTCTGAATTATG]




>consensus_10048#2
AGGCCAAAGCTCACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGTAC
CAATTCAATTCATACGAATTTTGCCTCTAGTTTAATTTTCTTCTTCTTTTGCTCTTGAAG
AAAAAACAAATTCATCTCCCGGCGAAAAAACAAATTCATGGCTTTACTAAGTTGTTCTTC
TCTCTTGTTCTTGCAGGGCAGCTCTAAGGCAGTACATGATCTTCGTTGCTTTGAGATACA
CCACGGCGACCTTCGTCACNGGCCTTCTCCAATATCGCTCCTGTNCTCACATTCTTGCTT
GCCATCCTAACACGGTAGGTTCTTGATTGGAAGACCCAATAAATTCTGAATTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10048#0      GAGACAGCTTAGCTTAGCTGTTGTTGTTGCAGTCCAGTCAGAGAGCAGAGGGCACTGCAC 60
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CGAGAGGATCGAGCTTCCAAGAACAAGTGAAGCTAGCATGGGGTGGTGGCTCGGAGGTGG 120
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CCTGCCGGTCATCGCCATGCTGGCTCTCAACGTCGTCGCGGCGGTGTTGGTGTCGCTCGT 180
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CAAGGTCGCCATGGACGGCGGCCTCAACCCTCTCGTCCTCGTCACTCTTCAGCAGCTCAC 240
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GGCCGCCATCTTCCTCGGCCCAATTGCCTACTTCAAAGAGAGGAAGTCCAGGCCAAAGCT 300
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CACACTGGAGATCTTCACTTATCTCTTCGTCAGTGCTGCGCTCGGGGCAGCTCTAAGGCA 360
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GTACATGATCTTCGTTGCTTTGAGATACACCACGGCGACCTTCGTCACTGCCATCTCCAA 420
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TATCGCTCCTGTCCTCACATTCTTGCTTGCCATCCTAACACGGTCAGAATCACTGAACCT 480
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GAGGAGAAAGACAGGCATTGCAAAGCTTGTGGGCACGCTGATATCAGTAGCAGGAGCCAT 540
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GGTGCTGACATTTTACAAGGGCGTGGCTGTCACCCACACAACCAAGATCCACCATGCAAC 600
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      AGCAGCAGCAGCAGTAGCAGCAGAAGCAGCCATGAGCAGCAGGAACTGGACGCTGGGCAC 660
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GGTGGCCATCCTGGGCAACTGCGTGTGCCTCTCCTGCTGGTTCCTCCTCCACAGCAGGCT 720
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CGCCAAGAAGTACCCCCATGTCTACTCCTGCAATGCCTTCATGTGCATGTTCAGCTTCCT 780
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CCAGGTGGCCGTCGTCGGCCTCTCCACACAACGCAACGTCTCCGTCTGGATCGTCAGGAC 840
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CAAGTTCCACATACTCACCATCCTCTACGCCGGTGTGGTGGGGTGTGGCCTTTCGTTTGT 900
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GCTACTGACATGGTGCATCGAGAAGCGCGGTCCAGTGTTCGTCGCAGCCTTCATTCCGGT 960
consensus_10048#1      ------------------------------------------------------------
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GGTGCAGATCATTGTTTCAGTGATTGACTTCACTGTCCTCCATGAACAGCTCTTCCTTGG 1020
consensus_10048#1      -----------------------------------CGCTCCATGAACAGCTCTTCCTTGG 25
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      AAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAG 1080
consensus_10048#1      AAGCGTGCTGGGATCTGTACTTGTGATAGGTGGCCTTTATCTTCTGCTGTGGGGCAAGAG 85
consensus_10048#2      ------------------------------------------------------------
                                                                                   

consensus_10048#0      GCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCA 1140
consensus_10048#1      GCAGGAGGCCTTGCACCTCCCTCCAAAAGTTGCTGAACATGATAAAGAGCAGCAACAGCA 145
consensus_10048#2      --------------------------AGGCCAAAGCTCACACTGGAGATCTTCACTTATC 34
                                                 * *     *  **   *  *** *  **      

consensus_10048#0      ACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGC-AACTCTGAATGAAGAGTG 1199
consensus_10048#1      ACAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAAGTGC-AACTCTGAATGAAGAGTG 204
consensus_10048#2      TCTTCGTCAGTGCTGCGCTCGGGTACCAATTCAATTCATACGAATTTTGCCTCTAGTTTA 94
                        *  *  ***         *    **     **     * * ** * **  *  **  * 

consensus_10048#0      GTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTC 1259
consensus_10048#1      GTGACAGCGTCCCCTTTGGGATTTTAACAAATAAGTTCTCCACCAACTTTTTTTTTTGTC 264
consensus_10048#2      ATTTT--CTTCTTCTTTTGCTCTTGAAGAAAAAA--------CAAATTCATCTCCCGGCG 144
                        *     * **  **** *   ** ** *** **        * ** *  * *    *  

consensus_10048#0      AATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTAT 1319
consensus_10048#1      AATCAGGGCAGCCATGTTGTTGTACAATTAATCCGAGAGCACTATCATGCATGAAGTTAT 324
consensus_10048#2      AAAAAACAAATTCATGGCTTTACTAAGTTGTTCTTCTCTCTTGTTCTTGCAGGGCAGCTC 204
                       **  *    *  ****   **    * **  **      *    ** **** *       

consensus_10048#0      TTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTA 1379
consensus_10048#1      TTAGGTTTTAATTGATCCAAAGAATACTAGAAATGATCTAAACCAACACTGAGTTAATTA 384
consensus_10048#2      TAAGGCAGTACATGATCT------TCGTTGCTTTGAGATACACCACGGCGACCTTCGTCA 258
                       * ***   **  *****       *  * *   ***  ** ****   *    **  * *

consensus_10048#0      GCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTC 1439
consensus_10048#1      GCTACCACTTCAGAAATAGATCCTGTATGCAATAGTTTAACTGCAACCATATAAGAATTC 444
consensus_10048#2      CNGGCCTTCTCCAATATCGCTCCTGTNCTCACATTCTTGCTTGCCATCCTAACACGGTAG 318
                           **   **  * ** * ******   **     **   *** * * **  *   *  

consensus_10048#0      TACGTGTGATTTATGGATAAACCGTGTAATTCCATGACTTCTGCGAGTTTACAAAAAAA 1498
consensus_10048#1      TACGTGTGATTTATGGATAAAAAAAAAAAAAAAAAANA--------------------- 482
consensus_10048#2      -GTTCTTGATTGGAAGACCCAATAAATTCTGAATTATG--------------------- 355
                             *****    **   *