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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 897 fasta sequence
[TCGATCGATCGATCATATATATATATGGATGAGCTACCTACACTGATATGATCCACCACAATTAATGTGCTCGAGACGACGCAGCAACAACCGCCGCGCCATTGATGACTAATTGAGATCGATCGATAGATAGTATAAGAGATCGACCACGAGCTCTCGATCAGCCTAGCTATAGCTATAGATAGATATACAA--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTGTTCTCTTCTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCAGCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTACTCGCGTGAGCTGCACGACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCCGCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCA-CTGCGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGACGTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTTTGATTTAGTTAATATTTTGTACTTCTGGTTTTAATTTGTGGTTATTGATCG]
[+] EMBL AK066535 [TCGATCGATCGATCATATATATATATGGATGAGCTACCTACACTGATATGATCCACCACAATTAATGTGCTCGAGACGACGCAGCAACAACCGCCGCGCCATTGATGACTAATTGAGATCGATCGATAGATAGTATAAGAGATCGACCACGAGCTCTCGATCAGCCTAGCTATAGCTATAGATAGATATACAA TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTGTTCTCTTCTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCAGCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTACTCGCGTGAGCTGCACGACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCCGCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCA CTGCGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGACGTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTTTGATTTAGTTAATATTTTGTACTTCTGGTTTTAATTTGTGGTTATTGAT ]
[+] EMBL AK120571 [ GCTATAGATAGATATACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTGTTCTCTTCTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCAGCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTACTCGCGTGAGCTGCACGACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCCGCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCA CTGCGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGACGTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTTTGATTTAGTTAATATTTTGTAC ]
[+] EMBL CB649850 [ TCTTCTGCTTGCCTCTTCCATGGAGTTGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCAGCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTACTCGCGTGAGCTGCACGACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCCGCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCA CTGCGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGACGTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTTTGATTTAGTTAATATTTTGTACTTCTGGTTTTAATTTGTGGTTATTGATCG]
[+] EMBL BI805256 [ tGTC CCGCCGTTC GTCCGGCCA GCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGC CCGGATGGGCT TGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTACTCGCGTGAGCTGCACGACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCC ACGCCAACAACATCTCCGCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCACCTGCGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGACGTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCCTTGTGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTTTGATTTAaaaaaaaaa ]
[+] EMBL CB678852 [ GCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCCGCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCA CTGAGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGAAGCCGCCGCCGCGCCGCTGCCGGCGACGTCGTCCGTGACCGCCGCCGTCGCCAGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGAGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGGAAGTTTAAGTACACGTATATGCTTTGATTTAGTTAATATTTTGTACTTCTGGATTTAATTTGTGGTTATTGATCG]
[+] EMBL CB680645 [ GCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGACGTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTAGCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTT ]
consensusID : consensus_10154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[TGTTCTCTTCTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCAGCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCAGTCAGTAATCCAAATCCAAATCGAGTTTTAGTTATCTCTGTTTTCTTGGGTTTTCTTTTGTACTTTTTAACCATTTGAATTTTTAATTTCAAAAATAAACCATTCTAAATCTATTTCCAGAATCTGAACATTTTTGGCACACCAAACCCACCAGACTTGACAAAATAACGTCAACACGCCAGCCGTAGCCGGCGTCATAGTTTAGTTTTGTACTATCATACCAACCATATCGATCGGAGTGGGCAAATAATAGCACTGCCACGCTAGTTAGACCTGCGTCGGTGTTGTCTTGGTAAAAGCTTCAAATCTTAATTACATATAAGTTTTGGAAGAGTTTAATTATTTTTTAAATTGAAGATTAAAAATGTTCTAAAAATTAAAACAAATTCTTGCGATGAGCTTAATCCTGTTCTTGATTTGGATCAAT]
[+] EMBL CB646129 [TGTTCTCTTCTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCAGCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACGTACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCAGTCAGTAATCCAAATCCAAATCGAGTTTTAGTTATCTCTGTTTTCTTGGGTTTTCTTTTGTACTTTTTAACCATTTGAATTTTTAATTTCAAAAATAAACCATTCTAAATCTATTTCCAGAATCTGAACATTTTTGGCACACCAAACCCACCAGACTTGACAAAATAACGTCAACACGCCAGCCGTAGCCGGCGTCATAGTTTAGTTTTGTACTATCATACCAACCATATCGATCGGAGTGGGCAAATAATAGCACTGCCACGCTAGTTAGACCTGCGTCGGTGTTGTCTTGGTAAAAGCTTCAAATCTTAATTACATATAAGTTTTGGAAGAGTTTAATTATTTTTTAAATTGAAGATTAAAAATGTTCTAAAAATTAAAACAAATTCTTGCGATGAGCTTAATCCTGTTCTTGATTTGGATCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10154#0 TCGATCGATCGATCATATATATATATGGATGAGCTACCTACACTGATATGATCCACCACA 60
consensus_10154#1 ------------------------------------------------------------
consensus_10154#0 ATTAATGTGCTCGAGACGACGCAGCAACAACCGCCGCGCCATTGATGACTAATTGAGATC 120
consensus_10154#1 ------------------------------------------------------------
consensus_10154#0 GATCGATAGATAGTATAAGAGATCGACCACGAGCTCTCGATCAGCCTAGCTATAGCTATA 180
consensus_10154#1 ------------------------------------------------------------
consensus_10154#0 GATAGATATACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATTGTTCTCTT 240
consensus_10154#1 ---------------------------------------------------TGTTCTCTT 9
*********
consensus_10154#0 CTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCA 300
consensus_10154#1 CTGCTTGCCTCTTCCATGGAGTGGGCTCGAGGTCCAGCCATGGCGGCAGCGGCAGCGGCA 69
************************************************************
consensus_10154#0 GCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACG 360
consensus_10154#1 GCGGTGGTGATGGTCGCCGCCGTTCTGGCCGGCCAGGCGATGGCCGCCGGCGCGACGACG 129
************************************************************
consensus_10154#0 TACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTC 420
consensus_10154#1 TACACGGTGGGCGCGCCGGATGGGCTGTGGGACATGGAGACCGACTACAAAGAGTGGGTC 189
************************************************************
consensus_10154#0 GCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTACTCGCGTGAGCTGCAC 480
consensus_10154#1 GCTCGCCGGACATTCCACCCCGGCGACAAGCTCAG--TCAGTAATCCAAATCCAAATCGA 247
********************************** *** * * * *
consensus_10154#0 GACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCC 540
consensus_10154#1 GTTTTAGTTATCTCTGTTTTCTTGGGTTTTCTTTTGTACTTTTTAACCATTTGAATTTTT 307
* * ** *** * * ** *** ** *
consensus_10154#0 GCCTTCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTC 600
consensus_10154#1 AATTTCAAAAATA--AACCATTCTAAATCTATTTCCAGAATCTGAA--CATTTTTGGCAC 363
*** *** * * * ** ** * * * * * * *
consensus_10154#0 TGCGGCCTCACCGGCCACTGCGGCAGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCC 660
consensus_10154#1 ACCAAACCCACCAGACTTGACAA-AATAACGTCAACACGCCAGCCGTAGCCGGCGTCATA 422
* * **** * * * * * * ** * * ** * ** ** *
consensus_10154#0 GCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCT-GCCGTCGACGTCGTCCGTGACCGC 719
consensus_10154#1 GTTTAGTTTTGTACTATCATACCAACCATATCGATCGGAGTGGGCAAATAATAGCACTGC 482
* * * * * * ** ** * * ** * * ** **
consensus_10154#0 CGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTA 779
consensus_10154#1 CACGCTAGTTAGAC-CTGCGTCGGTGT--TGTCTTGGTAAAAGCTTCAA--ATCTTAATT 537
* * * * ** * ** * * * ** * *** **** ** * *
consensus_10154#0 GCATTAATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTA 839
consensus_10154#1 ACAT--ATAAGTTTTGGAAGAGTTTAATTATTTTTTAAATTG-AAGATTAAAAATGTTCT 594
*** ** * ** ** * ******* ***** *** **** *
consensus_10154#0 TATGCTTTGATTTAGTTAATATTTTGTACTT----CTGGTTTTAATTTGTGGTTATTGAT 895
consensus_10154#1 AAAAATTAAAACAAATTCTTGCGATGAGCTTAATCCTGTTCTTGATTTG-GATCAAT--- 650
* ** * * ** * ** *** *** * ** ***** * * * *
consensus_10154#0 CG 897
consensus_10154#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||