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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 887 fasta sequence
[GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTATGAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTCTCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATC-CAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT-TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT-----TTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT]
[-] EMBL C74912 [GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTATGAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTCTCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATCNCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGT ]
[+] EMBL CB663497 [ CCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATC CAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT TTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT]
[+] EMBL AU225142 [ gccgCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT TTGGGAAGCCTCC AGTGTAATGATGGGACNAGGGCAAGATG CACTTTCGCGAgcgg ]
[-] EMBL BI811758 [ tttttttAAACATC TTGGACGCA TGTATCAAAGTGGGCAAC GTACAAGTACAATCTCATATATACAAAAGGACAATGACGCCTTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCA TGATTCATCAAGCCATCTAATA TGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGAAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG TTGGTTAACCTAGTTATCATTATTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAATCCTG TTTGTAT ]
[-] EMBL D42323 [ CCCTACCTTGAGTCACTGGATGACTGTCCAGTGCTTACAATGAAAGAGCTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTANCCTGATTTATCATATGGAAGCACCTCCAAACCTTTTGACATTTGG ]
consensusID : consensus_10184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC]
[-] EMBL BI812742 [TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC]
consensusID : consensus_10184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACTGGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATTGTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT]
[-] EMBL BI802759 [TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACTGGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATTGTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTAT 60
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 GAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTC 120
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 TCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATA 180
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 ATAGATCCAGCACATCCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAG 240
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 ATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGC 300
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 TTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGAT 360
consensus_10184#1 ------------------------------------------------------------
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 TCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACG 420
consensus_10184#1 ---TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACG 57
consensus_10184#2 ----TTTTTTTTT--------TGTACA-GTACA-TTCATATATACAAAAGGC--ATGACG 44
consensus_10184#0 CATTGCATCAAAGTGGGCAACTGTACAAGTACAATTCATATATACAAAAGGACAATGACG 480
* *** ** ***** ***************** ******
consensus_10184#1 CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC 117
consensus_10184#2 CCTTAC-TTGATGCACTGG-TGACTGTC-AGTG-TTACAT--GAAGACTTAAGAAGGG-- 96
consensus_10184#0 CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC 540
** *** ************ ******** **** ***** ********* * *
consensus_10184#1 ATTGATTCATCAAGCCAGTGTAATAT-GTGTTAGCTGGACAAAGTGCATCTATCTATTGA 176
consensus_10184#2 --TTGTTCATCAAGCCA-TCTAATATTGTGTTAGT--GGCAA--TGGATCTATCTATTGA 149
consensus_10184#0 ATTGATTCATCAAGCCA-TGTAATATTGTGTTAGCTGGACAAA-TGCATCTATCTATTGA 598
* ************ * ****** ******* * *** ** *************
consensus_10184#1 AGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTT 236
consensus_10184#2 ACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCC-ATATAAACAAACACTT 208
consensus_10184#0 A-CAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTT 657
* **************************************** ********** *****
consensus_10184#1 GCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 296
consensus_10184#2 GCC-AGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 267
consensus_10184#0 GCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 717
*** ********************************************************
consensus_10184#1 --TTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG 354
consensus_10184#2 CTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAG 327
consensus_10184#0 --TTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG 775
***** ************ * * **********************************
consensus_10184#1 TTTGGTTAACCTAGTTATTG------GGGAAGCCTCCAAGTGTAATGATGGGACCAGGGC 408
consensus_10184#2 TT-GGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGC 386
consensus_10184#0 TTTGGTTAACCTAGTTATTT------GGGAAGCCTCCAAGTGTAATGATGGGACCAGGGC 829
** ************** * ***************** ****************
consensus_10184#1 AAGATGCCACTTTCGCGAC-TTCTG-AAGGGAGGCTAATGAACCCTGTTT-GTATCTTAC 465
consensus_10184#2 A-GATGCCACTTTCG-GAC-TT-------------------------------------- 405
consensus_10184#0 AAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT-- 887
* ************* *** **
consensus_10184#1 AAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGA 525
consensus_10184#2 ------------------------------------------------------------
consensus_10184#0 ------------------------------------------------------------
consensus_10184#1 CTTCTATAACACAC 539
consensus_10184#2 --------------
consensus_10184#0 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||