cluster # 10192

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Oryza sativa
cluster # 10192 cluster # 10192 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10192#0 length = 898 sequences # 6

consensus_10192#1 length = 446 sequences # 1

consensusID : consensus_10192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 898
fasta sequence

                              [CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTGCCTTAGCTAATTAATTACTCTCCATTATTACAT-GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA]

[+] EMBL AK121059             [CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTGCCTTAGCTAATTAATTACTCTCCATTATTACAT GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAG                                                                                                                                                                             ]
[+] EMBL CA755757             [                        aattgTAAATTGTAGTAGTAACCACCTTAGCTAAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAATGTGCGCGCCACGTATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTATCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGNACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGGCAACTACAAGTTCGTCGACTGCGGCGACTACTGATTAAGCTATAGCTGCCTTAGCTAATTAATTACTCTCCATTA TACATGGCT ATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAAATTAGAG                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB630260             [                                                                             AGAAGGGTGGTGCCGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACATATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTACCTTAGCTAATTAATTACTCTCCATTATTACAT GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATGCACAGGAAGTATCAATTAATAGATTTCTCTTGA                                                                                                                                                                  ]
[+] EMBL CB630259             [                                                                                     GGTGCCGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACATATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTACCTTAGCTAATTAATTACTCTCCATTATTACAT GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATGCACAGGAAGTATCAATTAATAGATT                                                                                                                                                                          ]
[+] EMBL AT003727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA]
[+] EMBL AT003709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA]




>consensus_10192#0
CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGG
TGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCG
CCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCG
CGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACG
CCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTG
GTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGG
CGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGG
ACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCG
TCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTGCCTTAGCTAAT
TAATTACTCTCCATTATTACATGCTAATAAGGTTGCTGCTGCATATACATTATTGTCGAC
AGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATT
GTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATT
AATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAA
CATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTA
ATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA

consensusID : consensus_10192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [CAANGCCCNNNNANNNCNNCCCCNNCCGNCNNAANGGGNCNCCCNANAGAGCCNCGNCGGTTNCCCNCCCNANCGNNTNNNCGNNCGGTTNCNAGAAGNCCNCGTGGATTCCCNCCGGNCTGCAGNANTTCGGCNCNCAGNGTCGACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGATCAATANATTNAGCAGCTGATNAATAANTGTGATATGTTGATCGATCNGNTCAAGATCTNTGTATACATATTCCCAGNAAGNATCAATTAATAGATTTCTCTNGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGANATGATCNAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGNCATTNTCTAAAAAAAAAA]

[+] EMBL AT003413             [CAANGCCCNNNNANNNCNNCCCCNNCCGNCNNAANGGGNCNCCCNANAGAGCCNCGNCGGTTNCCCNCCCNANCGNNTNNNCGNNCGGTTNCNAGAAGNCCNCGTGGATTCCCNCCGGNCTGCAGNANTTCGGCNCNCAGNGTCGACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGATCAATANATTNAGCAGCTGATNAATAANTGTGATATGTTGATCGATCNGNTCAAGATCTNTGTATACATATTCCCAGNAAGNATCAATTAATAGATTTCTCTNGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGANATGATCNAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGNCATTNTCTAAAAAAAAAA]




>consensus_10192#1
CAANGCCCNNNNANNNCNNCCCCNNCCGNCNNAANGGGNCNCCCNANAGAGCCNCGNCGG
TTNCCCNCCCNANCGNNTNNNCGNNCGGTTNCNAGAAGNCCNCGTGGATTCCCNCCGGNC
TGCAGNANTTCGGCNCNCAGNGTCGACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGAT
CAATANATTNAGCAGCTGATNAATAANTGTGATATGTTGATCGATCNGNTCAAGATCTNT
GTATACATATTCCCAGNAAGNATCAATTAATAGATTTCTCTNGAGTATAATGGACTCTGT
GGATGGAGGTCAGCTGGANATGATCNAACATATCTTAAAAAAATCAATGGCGTCATATAT
TAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGA
TGTAGTGNCATTNTCTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10192#0      CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGG 60
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      TGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCG 120
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      CCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCG 180
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      CGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACG 240
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      CCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTG 300
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      GTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGG 360
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      CGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGG 420
consensus_10192#1      ------------------------------------------------------------
                                                                                   

consensus_10192#0      ACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCG 480
consensus_10192#1      --------------------------------CAANGCC-CNNNNANNNCNNCCCCNNCC 27
                                                       **  **  *    *   *  ** *  * 

consensus_10192#0      TCAACTACAAGTTCGTCGACTGCG--GCGACAACTGATTAAGCTATAGCTGCCTTAGCTA 538
consensus_10192#1      GNCNNAANGGGNCNCCCNANAGAGCCNCGNCGGTTNCCCNCCCNANCGNNTNNNCGNNCG 87
                             *   *     * *  * *   ** *   *       * *  *            

consensus_10192#0      ATTAATTACTCTCCATTATTACATGCTAATAAGGTTGCTGCTGCATATACATTATTGTCG 598
consensus_10192#1      GTTNCNAGAAGNCCNCG--TGGATTCCCNCCGGNCTGCAGNANTTCGGCNCNCAGNGTCG 145
                        **         **     *  ** *      *  *** *             *  ****

consensus_10192#0      ACAGGGC-AGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATA 657
consensus_10192#1      ACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGATCAATANATTNAGCAGCTGATNAATA 205
                       ***** * * ******* *** * ** ******** **** *** ********** ****

consensus_10192#0      ATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCA 717
consensus_10192#1      ANTGTGATATGTTGATCGATCNGNTCAAGATCTNTGTATACATATTCCCAGNAAGNATCA 265
                       * ******************* * ********* ************* *** *** ****

consensus_10192#0      ATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATC 777
consensus_10192#1      ATTAATAGATTTCTCTNGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGANATGATC 325
                       **************** ************************************ ******

consensus_10192#0      AAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACT 837
consensus_10192#1      NAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACT 385
                        ***********************************************************

consensus_10192#0      GTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAA 897
consensus_10192#1      GTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGNCATTNTCTAAAAAAAAA 445
                       ******************************************  *** ************

consensus_10192#0      A 898
consensus_10192#1      A 446
                       *