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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1966 fasta sequence
[CCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCCGCGTCGTCCACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCGGCGTGCCCGTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCGGTGGTGGCCGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGGACGGAATCGGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCTGATTTCGAGTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCGGAGCTCAAGGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTCCTGACCATGGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCCATCTGCTACTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACA-AGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCGCAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT-TTCCAAC-AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT-GCACTTATGAACCTGAA-GCTTGA-GGGATCAG-TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCA-CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAAAAA]
[+] EMBL AK121100 [CCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCCGCGTCGTCCACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCGGCGTGCCCGTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCGGTGGTGGCCGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGGACGGAATCGGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCTGATTTCGAGTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCGGAGCTCAAGGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTCCTGACCATGGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCCATCTGCTACTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACA AGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCGCAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT TTCCAAC AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT GCACTTATGAACCTGAA GCTTGA GGGATCAG TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCA CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATCTGCTTTTTTAGACTTA ]
[+] EMBL CB677331 [ GCTCAACAGCCTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACANAGGG AAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCAC ]
[+] EMBL CF304499 [ GATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACA AGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGT ]
[+] EMBL BQ905996 [ ATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT TTCCAAC AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT GCACTTATGAACCTGAA GCTTGA GGGATCAG TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGC ATGGACGTTTTCCTAGCCTTGTCTACCA CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAA ]
[+] EMBL BQ908709 [ CTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT TTCCAACTCAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT GCACTTATGAACCTGAAGGCTGGAGGGGATCAG TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCA CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAAC AACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCC AAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAAAAA]
[+] EMBL BM419701 [ TTTATGTTCC AC AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGATCGCACTTATGAACCTGAA GCTTGA GGGATCAGCTTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCACCTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAA ]
consensusID : consensus_10196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence
[CGAGATTTGAGAGGACTCTAATTGTAGCTGATGAGAGGAGCACGGTTAGCTATCTSGAAGTGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTKTGTAGAGCTTGTGTGTGAGGAGCAGGCATGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGWTTGWGGAGGGGAAGGATGGCATTTACAACTTTGTTACTAAGAGAGGACGGTACAWAGKGGCGGGACTCTAAKATCTCATKKGSACACAGGTTGTGACAGGTTCAGCAATTACATGGGAGTACCCAAGTRATKGTAGCTTCTTGGTGGTTAATACTGTTGGAGAGTTCTACTC]
[+] EMBL BE229486 [CGAGATTTGAGAGGACTCTAATTGTAGCTGATGAGAGGAGCACGGTTAGCTATCTSGAAGTGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTKTGTAGAGCTTGTGTGTGAGGAGCAGGCATGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGWTTGWGGAGGGGAAGGATGGCATTTACAACTTTGTTACTAAGAGAGGACGGTACAWAGKGGCGGGACTCTAAKATCTCATKKGSACACAGGTTGTGACAGGTTCAGCAATTACATGGGAGTACCCAAGTRATKGTAGCTTCTTGGTGGTTAATACTGTTGGAGAGTTCTACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10196#0 CCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCCGCGTCGTC 60
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCGGCGTGCCC 120
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCGGTGGTGGC 180
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGGACGGAATC 240
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCTGATTTCGA 300
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCGGAGCTCAA 360
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTCCTGACCAT 420
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCCATCTGCTA 480
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGACCCGGAGCT 540
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 TCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGT 600
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCAT 660
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGT 720
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTC 780
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGA 840
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAAT 900
consensus_10196#1 --------------------------------------CGAGATTTGAGAGGACTCTAAT 22
* ******************
consensus_10196#0 TGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAG-GGTGTACTGCTCCAGCTTATG 959
consensus_10196#1 TGTAGCTGATGAGAGGAGCACGGTTAGCTATCTSGAAGTGGTGTACTGCTCCAGCTTATG 82
*** ***************************** **** *********************
consensus_10196#0 ACTCCAACCAGCTCCATGCGGCGGTT-GTGGAGCTTGTGTGTGAGGAGCAGGCA-GAGAT 1017
consensus_10196#1 ACTCCAACCAGCTCCATGCGGCGGTKTGTAGAGCTTGTGTGTGAGGAGCAGGCATGAGAT 142
************************* ** ************************ *****
consensus_10196#0 CAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGAT-GAGGAGGGGAAGGGGGGCATTT 1076
consensus_10196#1 CAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGWTTGWGGAGGGGAAGGATGGCATTT 202
*********************************** * * *********** *******
consensus_10196#0 ACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGG-CGGGGCTCTAAGATCTCATGG--A 1133
consensus_10196#1 ACAACTTTGTTACTAAGAGAGGACGGTACAWAGKGGCGGGACTCTAAKATCTCATKKGSA 262
*************************** ** ** * **** ****** ******* *
consensus_10196#0 CACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTG--TGGAGCTTCTTGG 1191
consensus_10196#1 CACAGGTTGTGACAGGTTCAGCAATTACATGGGAGTACCCAAGTRATKGTAGCTTCTTGG 322
********* ********************** *********** * **********
consensus_10196#0 -GGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAG 1250
consensus_10196#1 TGGTTAATACTGTTGGAGAGTTCTACTC-------------------------------- 350
** * **********************
consensus_10196#0 ACACAGGGACAAAAATGATCCACAAGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAG 1310
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCG 1370
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTG 1430
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 CCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAA 1490
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 GCACTTCAAAAATAGGGGAGGACCAGCTATTTTATTTCCAACAAAGGGGGATAGACCATG 1550
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 AAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTT 1610
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 ACGAGTTTGCACATGAGATGGATGCACTTATGAACCTGAAGCTTGAGGGATCAGTTGGTT 1670
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 AATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGT 1730
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 ACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACC 1790
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 ACTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTT 1850
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 TTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAA 1910
consensus_10196#1 ------------------------------------------------------------
consensus_10196#0 TGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAAAAA 1966
consensus_10196#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||