cluster # 10249

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Oryza sativa
cluster # 10249 cluster # 10249 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10249#0 length = 677 sequences # 3
consensus_10249#1 length = 597 sequences # 2

consensus_10249#2 length = 282 sequences # 1
consensus_10249#3 length = 134 sequences # 1

consensusID : consensus_10249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 677
fasta sequence

                              [TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTG-CCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTGACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAATAAGATAAATGATCAAA]

[+] EMBL AK121662             [TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTG CCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTGACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAATAAGATAAATGATCAAA]
[+] EMBL AU058182             [                                          CTGGTCCGCGAGTGCGATGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGG CACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTG CCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGNGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAG ACGCCACAGCATGAGAGTNCCTGCTG CATCNTCCTAAGATGAAGAGAgc                                                                                                                                                                                                                                                 ]
[+] EMBL AU095003             [                                                                                                                                                                                                                             CTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTGACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAATAAGATAAAaa      ]




>consensus_10249#0
TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGT
GGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTT
CAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCC
AAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATC
TGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTAC
TCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCG
TGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTC
CTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGG
TGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAG
AGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTG
ACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAA
TAAGATAAATGATCAAA

consensusID : consensus_10249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence

                              [ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCAAAANAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF316202             [ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCAAAANAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK060676             [                                                                                                                                                                                                                                                                                       TGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCCCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCA                                          ]




>consensus_10249#1
ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGTGGCGATGGCGACA
TTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGC
GCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGT
TTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAG
TGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACA
CTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCG
CATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGA
AGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACA
AAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGC
TCATCCACTTGGGCAGCTGCGAGCTATTCAAAANAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10249#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [TTCAATGGATTGAAGCACCCACAGGCCCGTGTTGATTTCATGGCATCCCTGAAGAACGCCCCAGCATGAGAGTCCCTGCTGCCATTTTCTTAAAATAAAGAAAAGCTTATTGTTGGTACCCTCATACTGACTTTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACGTGTGTTGTAAATTTGTAATAATAACCAGGGCCCTCGTGGAAAAGACGATGTGCAGTTCATCCACTTGGGCAGTTGCGAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF316201             [TTCAATGGATTGAAGCACCCACAGGCCCGTGTTGATTTCATGGCATCCCTGAAGAACGCCCCAGCATGAGAGTCCCTGCTGCCATTTTCTTAAAATAAAGAAAAGCTTATTGTTGGTACCCTCATACTGACTTTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACGTGTGTTGTAAATTTGTAATAATAACCAGGGCCCTCGTGGAAAAGACGATGTGCAGTTCATCCACTTGGGCAGTTGCGAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10249#2
TTCAATGGATTGAAGCACCCACAGGCCCGTGTTGATTTCATGGCATCCCTGAAGAACGCC
CCAGCATGAGAGTCCCTGCTGCCATTTTCTTAAAATAAAGAAAAGCTTATTGTTGGTACC
CTCATACTGACTTTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACGTGTGTTGTAAAT
TTGTAATAATAACCAGGGCCCTCGTGGAAAAGACGATGTGCAGTTCATCCACTTGGGCAG
TTGCGAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10249#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [TAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGAGCAGCTGCGAGCTATTCTTTGGCTGTTTTCTTTGACCTGGGTTGGGAACTAATCCCATGCATAAACGGAAAAAAAAAAAAA]

[+] EMBL AA750479             [TAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGAGCAGCTGCGAGCTATTCTTTGGCTGTTTTCTTTGACCTGGGTTGGGAACTAATCCCATGCATAAACGGAAAAAAAAAAAAA]




>consensus_10249#3
TAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGAGCAGCTG
CGAGCTATTCTTTGGCTGTTTTCTTTGACCTGGGTTGGGAACTAATCCCATGCATAAACG
GAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10249#0      TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGT 60
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      -------------ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGT 47
consensus_10249#2      ------------------------------------------------------------
                                                                                   

consensus_10249#0      GGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTT 120
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      GGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTT 107
consensus_10249#2      ------------------------------------------------------------
                                                                                   

consensus_10249#0      CAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCC 180
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      CAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCC 167
consensus_10249#2      ------------------------------------------------------------
                                                                                   

consensus_10249#0      AAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATC 240
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      AAACTTGAACGGTTTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCT 227
consensus_10249#2      ------------------------------------------------------------
                                                                                   

consensus_10249#0      TGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTAC 300
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      GGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACT 287
consensus_10249#2      ------------------------------------------------------------
                                                                                   

consensus_10249#0      TCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCG 360
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      CCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGT 347
consensus_10249#2      ------------------------------TTCAATGGATTGAAGCACCCACAGGCCCGT 30
                                                                                   

consensus_10249#0      TGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTC 420
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      GCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCC 407
consensus_10249#2      GTTGATTTCATGGCATCCCTGAAGAACGCCCCAGCATGAGAGTCCCTGCTGCCATTTTCT 90
                                                                                   

consensus_10249#0      CTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGG 480
consensus_10249#3      ------------------------------------------------------------
consensus_10249#1      TAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGT 467
consensus_10249#2      TAAAATAAAGAAAAGCTTATTGTTGGTACCCTCATACTGACTTTTTGTAACTTGTAAGGT 150
                                                                                   

consensus_10249#0      TGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAG 540
consensus_10249#3      ---------------------------------TAATAATAAGCAGTGGCCTCGTGGAAG 27
consensus_10249#1      GAACTTTGCAACAAAAC-TGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAG 526
consensus_10249#2      GAACTTTGCAACAAAACGTGTGTTGTAAATTTGTAATAATAACCAGGGCCCTCGTGGAAA 210
                                                        ********* *** * ********** 

consensus_10249#0      AGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTG 600
consensus_10249#3      AGACGATGTGCAGCTCATCCACTTGAGCAGCTGCGAGCTATTCTTTGGCTGTTTTCTTTG 87
consensus_10249#1      AGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTC----------------- 569
consensus_10249#2      AGACGATGTGCAGTTCATCCACTTGGGCAGTTGCGAGTTATTC----------------- 253
                       ************* *********** **** ****** *****                 

consensus_10249#0      ACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAA 660
consensus_10249#3      ACCTGGGTTGGGAACTAATCCCATGCATAAACGGAAAAAAAAAAAAA------------- 134
consensus_10249#1      ----------AAAANAAA--------AAAAAAAAAAAAAAAAAAAA-------------- 597
consensus_10249#2      ----------AAAAAAAA--------AAAAAAAAAAAAAAAAAAAAA------------- 282
                                   **  **        * ***   *   * * * **              

consensus_10249#0      TAAGATAAATGATCAAA 677
consensus_10249#3      -----------------
consensus_10249#1      -----------------
consensus_10249#2      -----------------