cluster # 10332

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Oryza sativa
cluster # 10332 cluster # 10332 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10332#0 length = 909 sequences # 4

consensus_10332#1 length = 692 sequences # 2
consensus_10332#2 length = 329 sequences # 1

consensusID : consensus_10332#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 909
fasta sequence

                              [CTCTCCTCCATTTATTCNGGCTCATTAGCTGCAGCCGTGCAAGCGAGCATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGNGCGCTCGACCTCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGAGGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACACCAGCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTGGAGCGATGGCAAGAGAAGAGACCAACTTATGTGCGTACGTAAGAATGTGATGTGAGCTAGCTCAGATGCGCCCCATTGGGGCATACACCATGCTTGTGCAAGCTTTGCCTTGTGCTTCTTGATGCTGGTCATGTTCTTGGGCACCGGGACGGCCGCGCCCCAGGCTGGGTGGATGCTGGCTGGGGAGGGGTGCAGGGTTGGGTGGCGGGGGGGGACGGAGGTGGTGAGAAAGGTGGGGGGGGGGGCCCCGGGCCCCGCTTGTTCCTATGGGGGGTGGTGTTGAGGCGCCCCCGCTGGCCGGGGTGTGCCACGGGGGGGCCTGGGAAACCCCGGTGTGGCGCGCCGGGTTGGCGTAGGGGGCTCCCCCTGGGCCGCGGGGCGAGTGGAGATGAACCCCGCCGGGTGCCGTGCCACCTGAGCCACAGGGG]

[+] EMBL C74172               [CTCTCCTCCATTTATTCNGGCTCATTAGCTGCAGCCGTGCAAGCGAGCATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGNTGNANGNGGCGGtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OS1321929            [                  GGCTCATTAGCTGCAGCCGTGCAAGCAAGCATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGNGCGCTCGACCTnt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA756816             [                                                    TCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGGGCGCTCGACCTCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGAGGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACACCAGCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTGGAGCGATGGCAAGAGAAGAGACCAACTTATGTGCGTACGTAAGAATGTGATGTGAGCTAGCTCAGATGCGCCCCATTGGGGCATACACCATGCTTGTGCAAGCTTTGCCTTGTGCTTCTTGATGCTGGTCATGTTCTTGGGCACCGGGACGGCCGCGCCCCAGGCTGGGTGGATGCTGGCTGGGGAGGGGTGCAGGGTTGGGTGGCGGGGGGGGACGGAGGTGGTGAGAAAGGTGGGGGGGGGGGCCCCGGGCCCCGCTTGTTCCTATGGGGGGTGGTGTTGAGGCGCCCCCGCTGGCCGGGGTGTGCCACGGGGGGGCCTGGGAAACCCCGGTGTGGCGCGCCGGGTTGGCGTAGGGGGCTCCCCCTGGGCCGCGGGGCGAGTGGAGATGAACCCCGCCGGGTGCCGTGCCACCTGAGCCACAGGGG]
[+] EMBL C27428               [                                                ctncnctnGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGNGCGCTCGACCTCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGAGGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACACCAGCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_10332#0
CTCTCCTCCATTTATTCNGGCTCATTAGCTGCAGCCGTGCAAGCGAGCATCGTCCTGTTC
CTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCT
CCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGG
CGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGNGCGCTCGACCTCTTCGACGTCG
CCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGAGGTACGGGGTGG
GGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACACCAGCGGCACCT
TCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCG
CCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGT
GGAGCGATGGCAAGAGAAGAGACCAACTTATGTGCGTACGTAAGAATGTGATGTGAGCTA
GCTCAGATGCGCCCCATTGGGGCATACACCATGCTTGTGCAAGCTTTGCCTTGTGCTTCT
TGATGCTGGTCATGTTCTTGGGCACCGGGACGGCCGCGCCCCAGGCTGGGTGGATGCTGG
CTGGGGAGGGGTGCAGGGTTGGGTGGCGGGGGGGGACGGAGGTGGTGAGAAAGGTGGGGG
GGGGGGCCCCGGGCCCCGCTTGTTCCTATGGGGGGTGGTGTTGAGGCGCCCCCGCTGGCC
GGGGTGTGCCACGGGGGGGCCTGGGAAACCCCGGTGTGGCGCGCCGGGTTGGCGTAGGGG
GCTCCCCCTGGGCCGCGGGGCGAGTGGAGATGAACCCCGCCGGGTGCCGTGCCACCTGAG
CCACAGGGG

consensusID : consensus_10332#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [TCTCTCTTCTCTCTCTCCTCCATTTATTCTGGCTCATTAGCTGCAGCCGTGCAAGCGAGCATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGGGCGCTCGACCTCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGAGGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACA-CCAGCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATGTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTTGCCTTCTCCTTCTTGATGCTGCTCATGTTCTTGGTCACCGTGGACGCCTACGCCACAGCCTTGTATCAAGCTTCCATTTTCAGTTTTACAGCG]

[+] EMBL AK066218             [TCTCTCTTCTCTCTCTCCTCCATTTATTCTGGCTCATTAGCTGCAGCCGTGCAAGCGAGCATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGAGTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACACGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGGGCGCTCGACCTCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGAGGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACA CCAGCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATGTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTTGCCTTCTCCTTCTTGATGCTGCTCATGTTCTTGGTCACCGTGGACGCCTACGCCACAGCCTTGTATCAAGCTTCCATTTTCAGTTTTACAGCG]
[+] EMBL AU100822             [                                                                                                                                                                                                                                                                                                                                                                 ACCCACACCCAGCGGCACCTTCATCTACTTCTCCNTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCNTCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATGTAATGTAAGCTAGCTCAGATGCGCCCCATNTGTACATACACCATGCTTGTGCAATCTTTGCCTTCTCCTTCTTGATGCTGCTCATGTTCTTGGTCACCGTGGACGCTTACGCCACAGCCTTGTATCAAGCTTCCATTTTCAGTTTTAaaan ]




>consensus_10332#1
TCTCTCTTCTCTCTCTCCTCCATTTATTCTGGCTCATTAGCTGCAGCCGTGCAAGCGAGC
ATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGA
GTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACA
CGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGGGCGCTCGACC
TCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGA
GGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACA
CCAGCGGCACCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCG
CCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGC
GAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATG
TAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTTG
CCTTCTCCTTCTTGATGCTGCTCATGTTCTTGGTCACCGTGGACGCCTACGCCACAGCCT
TGTATCAAGCTTCCATTTTCAGTTTTACAGCG

consensusID : consensus_10332#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [GAGGTACGGGTGGGTGCGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTTTNACCCACACCAGCGNNNACCTTCATNTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATGTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTTGCCTTCTCCTTAAAAAAAAAAAAAAAAAA]

[+] EMBL AU097557             [GAGGTACGGGTGGGTGCGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTTTNACCCACACCAGCGNNNACCTTCATNTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCCGCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGGCGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAATGTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTTGCCTTCTCCTTAAAAAAAAAAAAAAAAAA]




>consensus_10332#2
GAGGTACGGGTGGGTGCGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTTTNACCCACA
CCAGCGNNNACCTTCATNTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCC
GCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGG
CGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAAT
GTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTT
GCCTTCTCCTTAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10332#1      TCTCTCTTCTCTCTCTCCTCCATTTATTCTGGCTCATTAGCTGCAGCCGTGCAAGCGAGC 60
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      ------------CTCTCCTCCATTTATTCNGGCTCATTAGCTGCAGCCGTGCAAGCGAGC 48
                                                                                   

consensus_10332#1      ATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGA 120
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      ATCGTCCTGTTCCTCGCGTCGGGGGAATCAAGAATCGGTAGGAATCGATCGAGGGGTTGA 108
                                                                                   

consensus_10332#1      GTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACA 180
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      GTGGTAGGTGCTCCTAGGAGGCGGCAATAATGCTGGAGGGGAAGGCGCGGGTGGAGGACA 168
                                                                                   

consensus_10332#1      CGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGGGCGCTCGACC 240
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      CGGACATGCCGGCGCGGATGCAGGCGGCGGCCACGTCCGCGGCGTCGCGNGCGCTCGACC 228
                                                                                   

consensus_10332#1      TCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGA 300
consensus_10332#2      ----------------------------------------------------------GA 2
consensus_10332#0      TCTTCGACGTCGCCGACTGCCGCGCCATCGCCGGACACATCAAGGCGGAGTTCGACAAGA 288
                                                                                 **

consensus_10332#1      GGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACA 360
consensus_10332#2      GGTACGGG-TGGGTGCGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTT-TTNACCCACA 60
consensus_10332#0      GGTACGGGGTGGGGTGGCAATGCGTGGTGGGCGCAAACTTCGGCTGCTTCTTCACCCACA 348
                       ******** ****   ********************************* ** *******

consensus_10332#1      CCAGCGGCA-CCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCC 419
consensus_10332#2      CCAGCGNNNACCTTCATNTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCC 120
consensus_10332#0      CCAGCGGCA-CCTTCATCTACTTCTCCCTCGAGCGCCTCTCCTTCCTCCTCTTCAAGGCC 407
                       ******    ******* ******************************************

consensus_10332#1      GCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGG 479
consensus_10332#2      GCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGG 180
consensus_10332#0      GCCGCCGCCGCCGCCATCGCCGCCTCCTAATCCTTCCATGCCCGGAGATCCATTCGCCGG 467
                       ************************************************************

consensus_10332#1      CGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAAT 539
consensus_10332#2      CGAACTACGGCGTCGAGCGATAGCAAGAGAAGAGACCAACTTATGTACGTACGTAAGAAT 240
consensus_10332#0      CGAACTACGGCGTGGAGCGATGGCAAGAGAAGAGACCAACTTATGTGCGTACGTAAGAAT 527
                       ************* ******* ************************ *************

consensus_10332#1      GTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTT 599
consensus_10332#2      GTAATGTAAGCTAGCTCAGATGCGCCCCATTTGTACATACACCATGCTTGTGCAATCTTT 300
consensus_10332#0      GTGATGTGAGCTAGCTCAGATGCGCCCCATTGGGGCATACACCATGCTTGTGCAAGCTTT 587
                       ** **** *********************** *  ******************** ****

consensus_10332#1      GCCTTCTCCTTCTTGATGCTGCTCATGTTCTTGGTCACCGTGGACGCCTACGCCACAGCC 659
consensus_10332#2      GCCTTCTCCTTAAAAAAAAAAAAAAAAAA------------------------------- 329
consensus_10332#0      GCCTTGTGCTTCTTGATGCTGGTCATGTTCTTGGGCACCGGGACGGCCGCGCCCCAGGCT 647
                       ***** * ***    *        *                                   

consensus_10332#1      TTGTATCAAGCTTCCATTTTCAGTTTTACAGCG--------------------------- 692
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      GGGTGGATGCTGGCTGGGGAGGGGTGCAGGGTTGGGTGGCGGGGGGGGACGGAGGTGGTG 707
                                                                                   

consensus_10332#1      ------------------------------------------------------------
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      AGAAAGGTGGGGGGGGGGGCCCCGGGCCCCGCTTGTTCCTATGGGGGGTGGTGTTGAGGC 767
                                                                                   

consensus_10332#1      ------------------------------------------------------------
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      GCCCCCGCTGGCCGGGGTGTGCCACGGGGGGGCCTGGGAAACCCCGGTGTGGCGCGCCGG 827
                                                                                   

consensus_10332#1      ------------------------------------------------------------
consensus_10332#2      ------------------------------------------------------------
consensus_10332#0      GTTGGCGTAGGGGGCTCCCCCTGGGCCGCGGGGCGAGTGGAGATGAACCCCGCCGGGTGC 887
                                                                                   

consensus_10332#1      ----------------------
consensus_10332#2      ----------------------
consensus_10332#0      CGTGCCACCTGAGCCACAGGGG 909