cluster # 10338

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Oryza sativa
cluster # 10338 cluster # 10338 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10338#0 length = 841 sequences # 4

consensus_10338#1 length = 666 sequences # 1
consensus_10338#2 length = 599 sequences # 2

consensusID : consensus_10338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 841
fasta sequence

                              [CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCTCTCATCATGGAGAAGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCTCCCAGGTGACCTGGATTTTTCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTCAGAAGCTATCGCCTGAAGCT]

[+] EMBL CB668044             [CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCTCTCATCATGGAGAAGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCTCCCAGGTGACCTGGATTTTTCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTCAGAAGCTATCGCCTGAAGCT]
[-] EMBL CB000512             [                                                                                                                    ACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATGGATAGACACTGCAGTTACTTCAGGTTTTTCATGCCCA                                                                                                                                                                                                    ]
[-] EMBL CF322922             [                                                                                                                                                                                                                                                                                TAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACAATGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCT                                                                                                                                      ]
[-] EMBL CA998176             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACT                                                                                                                                                                                                ]




>consensus_10338#0
CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACCTGAATAAATGCATTC
TCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTTGCCACACACTT
CAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGA
ATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGG
CAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTT
ACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTC
CTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGAT
TTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAA
GAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCG
TCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAA
TTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGA
ATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCTCTCATCATGGAGA
AGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCTCCCAGGTGACCTGGATTTT
TCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTCAGAAGCTATCGCCTGAAGC
T

consensusID : consensus_10338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACAGGCAAAACTATATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAACAAGAAAAAAGGCATTCTCAGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCACGGGGGCCACACACTTCAACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGGTGGCTGAAAATTTTGGAAAAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCTCGGATTTGAAACCGGGGGAAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTATGGAAACGCTGTACTTTTACAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTCCACTAAAAAAAACTCTCCCCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGAATTGCAGGAAATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATTCCCCCCAAGGAAGATATCGGCATACAATTTAGTATTAGAAATACTTGACGGATACTCTTTATTTAGATGAGACCAAAAATTTGGCT]

[+] EMBL CA762886             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACAGGCAAAACTATATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAACAAGAAAAAAGGCATTCTCAGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCACGGGGGCCACACACTTCAACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGGTGGCTGAAAATTTTGGAAAAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCTCGGATTTGAAACCGGGGGAAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTATGGAAACGCTGTACTTTTACAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTCCACTAAAAAAAACTCTCCCCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGAATTGCAGGAAATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATTCCCCCCAAGGAAGATATCGGCATACAATTTAGTATTAGAAATACTTGACGGATACTCTTTATTTAGATGAGACCAAAAATTTGGCT]




>consensus_10338#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACAGGCAAAACTA
TATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAACAAGAAAAAAGGCATTCTC
AGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCACGGGGGCCACACACTTCA
ACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGGTGGCTGAAAATTTTGGAA
AAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCTCGGATTTGAAACCGGGGG
AAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTATGGAAACGCTGTACTTTTA
CAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTCCACTAAAAAAAACTCTCC
CCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGAAT
TGCAGGAAATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAG
AAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATTCCCCCCAAGGAAGATATCGG
CATACAATTTAGTATTAGAAATACTTGACGGATACTCTTTATTTAGATGAGACCAAAAAT
TTGGCT

consensusID : consensus_10338#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence

                              [TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTGTCTGAAAATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAAAG]

[-] EMBL CF310363             [TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACAT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL BI811766             [                                                                                                              TTTTTTTTTAGGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACAAGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTGTCTGAAAATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAAAG]




>consensus_10338#2
TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
GGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAAC
CTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCA
CGGTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTG
TCTGAAAATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGG
ATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTATGGA
ATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCAC
TAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGG
AAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10338#0      ------------------------------------------------------------
consensus_10338#1      ------------------------------------------------------------
consensus_10338#2      TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTT 60
                                                                                   

consensus_10338#0      ------------------------------------------------------------
consensus_10338#1      ------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 42
consensus_10338#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 120
                                                                                   

consensus_10338#0      ----------------CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAAC 44
consensus_10338#1      GGAAAACAGGCAAAACTATATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAAC 102
consensus_10338#2      GGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAAC 180
                                         * **    **** ********** * **** * *********

consensus_10338#0      CTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCA 104
consensus_10338#1      AAGAAAAAAGGCATTCTCAGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCA 162
consensus_10338#2      CTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCA 240
                         *** *** ********* ** *** *** ** ***************** * ******

consensus_10338#0      CGGTTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGT 164
consensus_10338#1      CGGGGGCCACACACTTCAACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGG 222
consensus_10338#2      CGGT-GCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAG- 298
                       ***  ************* ********* ** ********************** **** 

consensus_10338#0      TGTCTGAAA-TTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCT 223
consensus_10338#1      TGGCTGAAAATTTTGGAAAAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCT 282
consensus_10338#2      TGTCTGAAA-ATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCT 357
                       ** ******  ******* * ***** ***** ** ********** **** ********

consensus_10338#0      CGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTAT 283
consensus_10338#1      CGGATTTGAAACCGGGGGAAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTAT 342
consensus_10338#2      CGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTAT 417
                       ********* ** * ** * *************************  ******** ****

consensus_10338#0      GGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTC 343
consensus_10338#1      GGAAACGCTGTACTTTTACAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTC 402
consensus_10338#2      GGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTC 477
                       **** **************** * **************************** **** **

consensus_10338#0      CACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACAT 403
consensus_10338#1      CACTAAAAAAAACTCTCCCCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACAT 462
consensus_10338#2      CACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACAT 537
                       ***** *  ********* ******** ****** *************************

consensus_10338#0      AGGAAACCTTTGAGGATTTGCAGGATATCTT--GCATTCAAGACCATTAGTAACCATGAA 461
consensus_10338#1      AGGAAACCTTTGAGGAATTGCAGGAAATCTT--GCATTCAAGACCATTAGTAACCATGAA 520
consensus_10338#2      AGGAAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAA 597
                       **********   *    ******* ****   ***************************

consensus_10338#0      AGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATT 521
consensus_10338#1      AGCATCAATGGCCTTCAAAGAAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATT 580
consensus_10338#2      AG---------------------------------------------------------- 599
                       **                                                          

consensus_10338#0      CCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATT 581
consensus_10338#1      CCCCCCAAGGAAGATATCGGCATACAATTTAGTATTAGAAATACTTGACGGATACTCTTT 640
consensus_10338#2      ------------------------------------------------------------
                                                                                   

consensus_10338#0      ATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATG 641
consensus_10338#1      ATTTAGATGAGACCAAAAATTTGGCT---------------------------------- 666
consensus_10338#2      ------------------------------------------------------------
                                                                                   

consensus_10338#0      CCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATA 701
consensus_10338#1      ------------------------------------------------------------
consensus_10338#2      ------------------------------------------------------------
                                                                                   

consensus_10338#0      TATGCTCTCATCATGGAGAAGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCT 761
consensus_10338#1      ------------------------------------------------------------
consensus_10338#2      ------------------------------------------------------------
                                                                                   

consensus_10338#0      CCCAGGTGACCTGGATTTTTCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTC 821
consensus_10338#1      ------------------------------------------------------------
consensus_10338#2      ------------------------------------------------------------
                                                                                   

consensus_10338#0      AGAAGCTATCGCCTGAAGCT 841
consensus_10338#1      --------------------
consensus_10338#2      --------------------