cluster # 1034

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Oryza sativa
cluster # 1034 cluster # 1034 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1034#0 length = 480 sequences # 1

consensus_1034#1 length = 304 sequences # 1

consensusID : consensus_1034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGGTGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTGTATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAACATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATCTGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGCTTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG]

[+] EMBL CA758804             [TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGGTGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTGTATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAACATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATCTGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGCTTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG]




>consensus_1034#0
TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGG
TGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTG
TATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAAC
ATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGC
TGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGG
GACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATC
TGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGC
TTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG

consensusID : consensus_1034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGTTATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATCTGTGTTAATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGCTTCTAATGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA754771             [TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGTTATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATCTGTGTTAATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGCTTCTAATGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1034#1
TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAG
AATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGT
TATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATCTGTGTT
AATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGCTTCTAA
TGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1034#0      TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGG 60
consensus_1034#1      ------------------------------------------------------------
                                                                                  

consensus_1034#0      TGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTG 120
consensus_1034#1      ------------------------------------------------------------
                                                                                  

consensus_1034#0      TATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAAC 180
consensus_1034#1      ------------------------------------------------------------
                                                                                  

consensus_1034#0      ATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGC 240
consensus_1034#1      ------TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGC 54
                            ******************************************************

consensus_1034#0      TGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGG 300
consensus_1034#1      TGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGG 114
                      ************************************************************

consensus_1034#0      GACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATC 360
consensus_1034#1      GACAGTTATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATC 174
                      ***** **************************** ****** ******************

consensus_1034#0      TGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGC 420
consensus_1034#1      TGTGTTAATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGC 234
                      ************ ***************** *** ********** **************

consensus_1034#0      TTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG 480
consensus_1034#1      TTCTAATGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 294
                      *** ************ ***********   * ***  ****    ***  * *      

consensus_1034#0      ----------
consensus_1034#1      AAAAAAAAAA 304