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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1736 fasta sequence
[AGGCCGCTGGAGAAGGCCGGGGCGGCGGGGCTGGTCGCGATGCTGGCCGCCGCCGCCGCGCTGCTCCTGCTCGTGTGCGCCGCCTCGCTCCGCTGCTCGGCCGCCGTCGGCTCGGCGCTGGCGGCGCCCAAGAAGCTCCTCAGCGGCGGGGTCTCCATCGAGGAGCCCCGCGGCGGCGGCGCCGGCGGAGGCGGCGGAGGCGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGGACGACGGCTACCCGCTCTACGCCTCCAGGGATTGCCCCTTCCTCGACGTCGGCTTCCGCTGCTCCGAGAACGGCCGCCCCGACGACTCCTACACCAAGTGGCGATGGCGCCCCTCCCGCTGCGATCTCCCCAGATTTAATGCCAGAAATATGCTAGAGAAACTCAGAAACAGAAGAGTTGTATTTGTTGGGGATTCGATTGCAAGAAACCAATGGGAGTCTCTGCTTTGTATGCTCGCTGCTGCTGTTCCTGACAAGAGCTCCATCTTTGAAGTTAATGGGAATCCTATTACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGAGTACAATTGCACTGTGGAGTATTACAGGTCTCCTTTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATTAGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC-TTGTCGGGCTGGATATA-CTGAATGTGA-CTCAGATGA-CAGCTCTGCGT-AAAGACGGGCACCTCTCGGTGTACCTGAGTCCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATG-CCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGTGTGTTTCATACAGAATGATTGGTGTAAATATATAGCAGCTGCGAAATGGGCAGCTTGTTTCAGTTGTGTACTACTATGTAATTTGAAGAATTTNGTTTGTGACGCAAAAAAAAAAA]
[+] EMBL AK063322 [AGGCCGCTGGAGAAGGCCGGGGCGGCGGGGCTGGTCGCGATGCTGGCCGCCGCCGCCGCGCTGCTCCTGCTCGTGTGCGCCGCCTCGCTCCGCTGCTCGGCCGCCGTCGGCTCGGCGCTGGCGGCGCCCAAGAAGCTCCTCAGCGGCGGGGTCTCCATCGAGGAGCCCCGCGGCGGCGGCGCCGGCGGAGGCGGCGGAGGCGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGGACGACGGCTACCCGCTCTACGCCTCCAGGGATTGCCCCTTCCTCGACGTCGGCTTCCGCTGCTCCGAGAACGGCCGCCCCGACGACTCCTACACCAAGTGGCGATGGCGCCCCTCCCGCTGCGATCTCCCCAGATTTAATGCCAGAAATATGCTAGAGAAACTCAGAAACAGAAGAGTTGTATTTGTTGGGGATTCGATTGCAAGAAACCAATGGGAGTCTCTGCTTTGTATGCTCGCTGCTGCTGTTCCTGACAAGAGCTCCATCTTTGAAGTTAATGGGAATCCTATTACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGAGTACAATTGCACTGTGGAGTATTACAGGTCTCCTTTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATTAGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC TTGTCGGGCTGGATATA CTGAATGTGA CTCAGATGA CAGCTCTGCGT AAAGACGGGCACCTCTCGGTGTACCTGAGTCCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATG CCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTT ]
[+] EMBL CF323394 [ TCCTTTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATTAGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC TTGTCGGGCTGGATATA CTGAATGTGA CTCAGATGA CAGCTCTGCGT A ]
[+] EMBL AU057671 [ TGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC TTGTCGGGCTGGATATA CTGAATGTGA CTCAGATGA CAGCTCTGCGTAAAAGACGGGCACCTCTCGGTGTACCTGAGTCCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATG CCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACAC ]
[+] EMBL AU057672 [ cacCGCCCAAGCTTTGTCGGNCTGGATATACCTGAATGTGACCTCAGATGACCAGCTCTGCGTAAAAGACGGGCCCCTCTCGGTGTACCTGAGTCCTTCAGGNCCTGC TCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGC TGGAATGAACTCCTCTATGCCCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTNTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTC TTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGTGTGTTTCATACAGAATGATTGGTGTAAATATATAGCAGCTGCGAAATGGGCAGCTTGTTTCAGTTGTGTACTACTATGTAATTTGAAGAATTTNGTTTGTGACGCAAAAAAAAAAA]
consensusID : consensus_10363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 530 fasta sequence
[GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAACGACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGCTCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGCGATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTATTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCTCTTCTTTGTATGCTCTCTGTTGCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCTTTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCT-GNGGTTGTTAAATATACAATTAGGGTAGATGCCATGGATTGGTTGTCTGACCGGGGCCAGTGGAGGGATGCTGATGTATTGAT]
[+] EMBL CF303121 [GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAACGACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGCTCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGCGATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTATTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCTCTTCTTTGTATGCTCTCTGTTGCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCTTTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCT GNGGTTGTTAAATATACAATTAGGGTAGATGCCATGGATTGGTTGTCTGACCGGGGCCAGTGGAGGGATGCTGATGTATTGAT]
[+] EMBL CF304500 [GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAACGACAGCTACCC ]
[+] EMBL CF324530 [ CGACCTGTTC ACGGGGAGTGGGTGTGGAACGACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGCTCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGCGATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTATTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCCCTTCTTTGTATGCTCTCTGTTGCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCTTTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCTGGGGGTTGTTAAATATACAATTAGGGTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10363#0 AGGCCGCTGGAGAAGGCCGGGGCGGCGGGGCTGGTCGCGATGCTGGCCGCCGCCGCCGCG 60
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CTGCTCCTGCTCGTGTGCGCCGCCTCGCTCCGCTGCTCGGCCGCCGTCGGCTCGGCGCTG 120
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 GCGGCGCCCAAGAAGCTCCTCAGCGGCGGGGTCTCCATCGAGGAGCCCCGCGGCGGCGGC 180
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 GCCGGCGGAGGCGGCGGAGGCGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGGAC 240
consensus_10363#1 ------------GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAAC 48
* * * ************************************ **
consensus_10363#0 GACGGCTACCCGCTCTACGCCTCCAGGGATTGCCCCTTCCTCGACGTCGGCTTCCGCTGC 300
consensus_10363#1 GACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGC 108
*** ************** ***** *** *********** ******** ***** ***
consensus_10363#0 TCCGAGAACGGCCGCCCCGACGACTCCTACACCAAGTGGCGATGGCGCCCCTCCCGCTGC 360
consensus_10363#1 TCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGC 168
********************** ****** ********** *** * ** ** ******
consensus_10363#0 GATCTCCCCAGATTTAATGCCAGAAATATGCTAGAGAAACTCAGAAACAGAAGAGTTGTA 420
consensus_10363#1 GATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTA 228
*************** **************** ***** * ******* ****** ***
consensus_10363#0 TTTGTTGGGGATTCGATTGCAAGAAACCAATGGGAGTCTCTGCTTTGTATGCTCGCTGCT 480
consensus_10363#1 TTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCTCTTCTTTGTATGCTCTCTGTT 288
******** ***** **** * ***** ***** ***** ************ *** *
consensus_10363#0 GCTGTTCCTGACAAGAGCTCCATCTTTGAAGTTAATGGGAATCCTATTACAAAACACATG 540
consensus_10363#1 GCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATG 348
*********** ************** ***************** ** ************
consensus_10363#0 GGTTTCTTAATTTTCAAGTTTAGAGAGTACAATTGCACTGTGGAGTATTACAGGTCTCCT 600
consensus_10363#1 GGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCT 408
************************** *********** ***** ******** ******
consensus_10363#0 TTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATT 660
consensus_10363#1 TTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCTGNGGTTGTTAAATATACAATT 468
** ************** ***** *** ******* **** ** ** ************
consensus_10363#0 AGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTG 720
consensus_10363#1 AGGGTAGATGCCATGGATTGGTTGTCTGACCGGGGCCAGTGGAGGGATGCTGATGTATTG 528
** ****************** ****** ****** ****** ********** * ***
consensus_10363#0 ATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTC 780
consensus_10363#1 AT---------------------------------------------------------- 530
**
consensus_10363#0 CAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATG 840
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTC 900
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCAC 960
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 TTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTT 1020
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 GAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGCTTGTCGGGCTGGATATA 1080
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CTGAATGTGACTCAGATGACAGCTCTGCGTAAAGACGGGCACCTCTCGGTGTACCTGAGT 1140
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTC 1200
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CCTGATGCATGGAATGAACTCCTCTATGCCTTGTTCTTGAGAAGAAAGATGGTGATGCCC 1260
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAG 1320
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 TACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAG 1380
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 GTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGA 1440
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 AGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGG 1500
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACA 1560
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 TCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGT 1620
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 GTGTTTCATACAGAATGATTGGTGTAAATATATAGCAGCTGCGAAATGGGCAGCTTGTTT 1680
consensus_10363#1 ------------------------------------------------------------
consensus_10363#0 CAGTTGTGTACTACTATGTAATTTGAAGAATTTNGTTTGTGACGCAAAAAAAAAAA 1736
consensus_10363#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||