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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1596 fasta sequence
[TGCACTGCATCAACTGCATCTGCATGCATGTATTTAACAGACACCACTGGAGCTTCGCTAATGGCGACATCGTAGCTAGCTACACACACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGCAGTAGTGGAGGCAGCAACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTG-TTGGTGCCTTCTAGCTCCGGCGAGGCCTCGCCGGAGGCCGTCCTGATGAGCCCCACCTCCACTCTCCAGACGGCCAGCGCGACGTCCCCGTGTAGTGGACGTACCACCGGCGCCGCCGCCACGGCCGTCCCGTTCTCCCGCCGCCGCCGCCACGGCGGCGGCGGCGTCGGGCGCGGGCCGGCCGACGGGGATGGACAGTGCAGGACCCACCGCCCTTGGGACGCGACGAGGCCCGTCGGGCTCGGGCTCGTCGGCGCCCTGAACGACGACGAGGACGACGACGACGGAGAGGTCGACGCCGCCCCCGGCGACGCCGCGGCGTCGTCTGTCCTGACCGGGCAGATCAGGCTCCGGGTCCAGACGAACTACTACGCGCCGTGCACGGAGTTCGGCGTCAAGAGCGGCGGCGCCGCCGTGCAGTACGCGCCTCCTCCTCGCCGCCGGTGGATGTCGCCGAGGGAGATGATGGAGGAGATGTCGGAGGACTACACCTGCGTCATCGCGCGCGGGGCCAACCCGAGGACGACGCACATCTTCGACAACCGCGTCGTCGAGAGCTCCGGCGACGGCGAGTACTTCTCGCCGGAGCTCTGGCCACCGAGCGCCGCCGGCAAGGGCGACGACGACGGCGACGGCGACTTCTTGCGCTACTGCCATGGCTGCAGCAAGGACCTTGGCCTAGGCAAGGACATCTTCATGTACAGGGGTGAGAAGGCCTTCTGCAGCCACGAATGCCGCTACCACGAGATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTATTTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGATTTGCATGTCAGTGATGTCATTAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTGTGGTAATAGTGGTACGGATTGATTGGACTGTCCATCTCTAAGCAGCAAGTGT]
[+] EMBL AK109893 [TGCACTGCATCAACTGCATCTGCATGCATGTATTTAACAGACACCACTGGAGCTTCGCTAATGGCGACATCGTAGCTAGCTACACACACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGCAGTAGTGGAGGCAGCAACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTG TTGGTGCCTTCTAGCTCCGGCGAGGCCTCGCCGGAGGCCGTCCTGATGAGCCCCACCTCCACTCTCCAGACGGCCAGCGCGACGTCCCCGTGTAGTGGACGTACCACCGGCGCCGCCGCCACGGCCGTCCCGTTCTCCCGCCGCCGCCGCCACGGCGGCGGCGGCGTCGGGCGCGGGCCGGCCGACGGGGATGGACAGTGCAGGACCCACCGCCCTTGGGACGCGACGAGGCCCGTCGGGCTCGGGCTCGTCGGCGCCCTGAACGACGACGAGGACGACGACGACGGAGAGGTCGACGCCGCCCCCGGCGACGCCGCGGCGTCGTCTGTCCTGACCGGGCAGATCAGGCTCCGGGTCCAGACGAACTACTACGCGCCGTGCACGGAGTTCGGCGTCAAGAGCGGCGGCGCCGCCGTGCAGTACGCGCCTCCTCCTCGCCGCCGGTGGATGTCGCCGAGGGAGATGATGGAGGAGATGTCGGAGGACTACACCTGCGTCATCGCGCGCGGGGCCAACCCGAGGACGACGCACATCTTCGACAACCGCGTCGTCGAGAGCTCCGGCGACGGCGAGTACTTCTCGCCGGAGCTCTGGCCACCGAGCGCCGCCGGCAAGGGCGACGACGACGGCGACGGCGACTTCTTGCGCTACTGCCATGGCTGCAGCAAGGACCTTGGCCTAGGCAAGGACATCTTCATGTACAGGGGTGAGAAGGCCTTCTGCAGCCACGAATGCCGCTACCACGAGATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTATTTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGATTTGCATGTCAGTGATGTCATTAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTGTGGTAATAGTGGTACGGATTGATTGGACTGTCCATCTCTAAGCAGCAAGTGT]
[+] EMBL AU070234 [ CACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGCAGTAGTGGAGGCAGCNACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTG TTGGTGCCTTCTAGCTCCGGCGANGCCTCG CGGANGCCGTCCTGATGAGCCCCACCTCCACTCTC ]
[+] EMBL AU162530 [ CACTGTACATGCTGCTGATCTCCTGCGAAAACTGAAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTGGTAATTATTGATTTTGATGCNAGTATTAGCATGTTGAGGAAGAGAGCNAAGCCAAGTAGCAGTNGTGGAGGCAGCTACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGCGGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTGTTTGGTGCCTNCTAGCTCCGGCGAGGC ]
[-] EMBL C74524 [ ACTGGCTGATTCAATCAGCCAGGTTAATTTTCAGAANTTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGNCNTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGA ]
[+] EMBL AU094813 [ CAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATG ]
consensusID : consensus_10459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 378 fasta sequence
[TCGACTCGCCAGA-TTTTTTA-TTTTGTAAACTCCAACTTGCTGATT-CAATC-AGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATNTTAATTAATCTGCTCCCTTTTNTGGTTNTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCANAGTTGAGATCCATGTCGCCTTCANANATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCNAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU173829 [TCGACTCGCCAGA TTTTTTA TTTTGTAAACTCCAACTTGCTGATT CAATC AGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATNTTAATTAATCTGCTCCCTTTTNTGGTTNTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCANAGTTGAGATCCATGTCGCCTTCANANATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCNAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU032259 [ GCCAGANTCTTCTATTTTTGTAAACTCCAACTTGCTGATTACAATCNAGCCAGGTTAATTTTCAGNAATTGGAGAAGAAGATCAGCGTNATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTNATGCAACTGTTGNGTTCCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10459#0 TGCACTGCATCAACTGCATCTGCATGCATGTATTTAACAGACACCACTGGAGCTTCGCTA 60
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 ATGGCGACATCGTAGCTAGCTACACACACTGTACATGCTGCTGATCTCCTGCGAAAACTG 120
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 AAGATAACAGCCAGCTCTGCATGCTTGGCTAGCCTAGCTAGCTGCAGGATTATTGCTGTG 180
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GTAATTATTGATTTTGATGCTAGTATTAGCATGTTGAGGAAGAGAGCTAAGCCAAGTAGC 240
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 AGTAGTGGAGGCAGCAACAAGCAGCAGCACGAGATTGCGTTTGATCACGGCGGCGGCGGC 300
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GGCGGCGCGGCTGCCATTTCGGCTCCCAAGCTGTTGGTGCCTTCTAGCTCCGGCGAGGCC 360
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 TCGCCGGAGGCCGTCCTGATGAGCCCCACCTCCACTCTCCAGACGGCCAGCGCGACGTCC 420
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 CCGTGTAGTGGACGTACCACCGGCGCCGCCGCCACGGCCGTCCCGTTCTCCCGCCGCCGC 480
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 CGCCACGGCGGCGGCGGCGTCGGGCGCGGGCCGGCCGACGGGGATGGACAGTGCAGGACC 540
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 CACCGCCCTTGGGACGCGACGAGGCCCGTCGGGCTCGGGCTCGTCGGCGCCCTGAACGAC 600
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GACGAGGACGACGACGACGGAGAGGTCGACGCCGCCCCCGGCGACGCCGCGGCGTCGTCT 660
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GTCCTGACCGGGCAGATCAGGCTCCGGGTCCAGACGAACTACTACGCGCCGTGCACGGAG 720
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 TTCGGCGTCAAGAGCGGCGGCGCCGCCGTGCAGTACGCGCCTCCTCCTCGCCGCCGGTGG 780
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 ATGTCGCCGAGGGAGATGATGGAGGAGATGTCGGAGGACTACACCTGCGTCATCGCGCGC 840
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GGGGCCAACCCGAGGACGACGCACATCTTCGACAACCGCGTCGTCGAGAGCTCCGGCGAC 900
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GGCGAGTACTTCTCGCCGGAGCTCTGGCCACCGAGCGCCGCCGGCAAGGGCGACGACGAC 960
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GGCGACGGCGACTTCTTGCGCTACTGCCATGGCTGCAGCAAGGACCTTGGCCTAGGCAAG 1020
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GACATCTTCATGTACAGGGGTGAGAAGGCCTTCTGCAGCCACGAATGCCGCTACCACGAG 1080
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 ATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTAT 1140
consensus_10459#1 ---------------------------------------TCGACTCGCCAGATTTTTTAT 21
************** ** ***
consensus_10459#0 TTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGA 1200
consensus_10459#1 TTTGTAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGA 81
************************************************************
consensus_10459#0 AGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAAT 1260
consensus_10459#1 AGATCAGCGTGATCCTGAAACTGGAAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAAT 141
************************************************************
consensus_10459#0 GGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTAATCTGCTCCCTTTTCT 1320
consensus_10459#1 GGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATNTTAATTAATCTGCTCCCTTTTNT 201
************************************ ********************* *
consensus_10459#0 GGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGAC 1380
consensus_10459#1 GGTTNTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGAC 261
**** *******************************************************
consensus_10459#0 TTCAGAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGT 1440
consensus_10459#1 TTCANAGTTGAGATCCATGTCGCCTTCANANATTGGCATTGTCCCTGTTTTTGTTTAAGT 321
**** *********************** * *****************************
consensus_10459#0 ATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCATGATTTGCATGTCAGTGATGTCAT 1500
consensus_10459#1 ATGTATAAGAGTGGTTCATGCAACTGTTGCGTTCCNAAAAAAAAAAAAAAAAAAAAA--- 378
*********************************** * * * *
consensus_10459#0 TAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTGTGGTAATAGTGGTACG 1560
consensus_10459#1 ------------------------------------------------------------
consensus_10459#0 GATTGATTGGACTGTCCATCTCTAAGCAGCAAGTGT 1596
consensus_10459#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||