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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1707 fasta sequence
[ACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCCTCGTCACTTCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAAC-TTCAAAGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAG-CCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACTGTGAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071835 [ACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCCTCGTCACTTCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGACGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAAC TTCAAAGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAG CCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGT ]
[+] EMBL CB640247 [ AATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAACTTTCAAA GGTCCTA ]
[+] EMBL CB684038 [ AGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAAC TTCAAAGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAG CCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTAT AATCATTTGAATTGTGAAAAGACCTCTGACAATGA ]
[-] EMBL CB684039 [ GAATGGAAATTCAAGCCCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAGATCAAAAGAACTTTGTGACGTGGTAATTTAC ]
[+] EMBL OS0133A [ ACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACT CCCCGTGAA TTATCGTTCG TATGTCATGGCTATTG ]
[+] EMBL CA882794 [ CTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACTGTGAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[AGCCAGCCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACCGTGTAACCCTTTGTGCCGCTCCTTTAATCATCTGTTGCCTATGTGCTATTTGTGCTTAAAAA]
[+] EMBL C97926 [AGCCAGCCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACCGTGTAACCCTTTGTGCCGCTCCTTTAATCATCTGTTGCCTATGTGCTATTTGTGCTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10462#0 ACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCCTCGTCACT 60
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 TCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGG 120
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 AGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGG 180
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 ACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGC 240
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 TGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCT 300
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 ACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAG 360
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 TCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAA 420
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 AGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTT 480
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 GCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAACTTCAAAGGGTCCT 540
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 ATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATAC 600
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 AATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAG 660
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 AGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCT 720
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 CACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGA 780
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 GTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAGCCTTG 840
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 GTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCT 900
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 CTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACA 960
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 GTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATT 1020
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 CAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTG 1080
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 AAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACT 1140
consensus_10462#1 ------------------------------------------------------------
consensus_10462#0 CTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGC-AG 1199
consensus_10462#1 --------------------------------------------------AGCCAGCCAG 10
**** **
consensus_10462#0 GAAGGAGTTGAAGCAAACTTTCTTAATTC-ACTCGACCATGTACAGAAGATTGAGATTTT 1258
consensus_10462#1 GAAGGAGTTGAAGCAAACTTTCTTAATTCCACTCGACCATGTACAGAAGATTGAGATTTT 70
***************************** ******************************
consensus_10462#0 GAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATC 1318
consensus_10462#1 GAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATC 130
************************************************************
consensus_10462#0 AAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAA 1378
consensus_10462#1 AAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAA 190
************************************************************
consensus_10462#0 ACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACT 1438
consensus_10462#1 ACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACT 250
************************************************************
consensus_10462#0 GCC-GGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTC 1497
consensus_10462#1 GCCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTC 310
*** ********************************************************
consensus_10462#0 ATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTA 1557
consensus_10462#1 ATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTA 370
************************************************************
consensus_10462#0 GTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAAT 1617
consensus_10462#1 GTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAAT 430
************************************************************
consensus_10462#0 GTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAA 1677
consensus_10462#1 GTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAA 490
************************************************************
consensus_10462#0 ACTGTGAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 1707
consensus_10462#1 ACCGTGTAACCCTTTGTGCCGCTCCTTTAATCATCTGTTGCCTATGTGCTATTTGTGCTT 550
** *** ** **
consensus_10462#0 -----
consensus_10462#1 AAAAA 555
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||