cluster # 10467

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Oryza sativa
cluster # 10467 cluster # 10467 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10467#0 length = 643 sequences # 6

consensus_10467#1 length = 323 sequences # 1

consensusID : consensus_10467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 643
fasta sequence

                              [GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCGTGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGCGCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGAGTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGCATGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGGCGTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG]

[+] EMBL OSR3354A             [GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCGTGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGCGCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGAGTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTTCACGC                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSR25271A            [GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCGTGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGCGCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGAGTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTNTTCCTCCTCTGGTTCTTCTTCTTGAAATAGA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB639738             [                                                                                                                                                                                                                    GGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCNATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAA                                                                                                                        ]
[+] EMBL AU222717             [                                                                                                                                                                                                                      ACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGCATGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGGCGTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG]
[+] EMBL CB640581             [                                                                                                                                                                                                                                                                  CTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGA                                                                                                                                                 ]
[+] EMBL CB640537             [                                                                                                                                                                                                                                                                  CTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGTTTTTGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATT                                                                                                                                                                      ]




>consensus_10467#0
GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCG
TGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGC
GCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGA
GTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCG
CCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAA
ATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGT
TGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTT
TTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCT
TGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGCA
TGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGGC
GTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG

consensusID : consensus_10467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [CTCGTGCCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGGANAACNTGAAACGCGGCGAAGACNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGGAAGCGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNCCGCCGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGTCTGGCGAAAACCACCCCCACCAC]

[+] EMBL BE228373             [CTCGTGCCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGGANAACNTGAAACGCGGCGAAGACNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGGAAGCGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNCCGCCGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGTCTGGCGAAAACCACCCCCACCAC]




>consensus_10467#1
CTCGTGCCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATC
GATTGCTTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGG
ANAACNTGAAACGCGGCGAAGACNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGG
AAGCGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNC
CGCCGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGT
CTGGCGAAAACCACCCCCACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10467#0      GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCG 60
consensus_10467#1      ------------------------------------------------------------
                                                                                   

consensus_10467#0      TGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGC 120
consensus_10467#1      ------------------------------------------------------------
                                                                                   

consensus_10467#0      GCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGA 180
consensus_10467#1      ------------------------------------------------------------
                                                                                   

consensus_10467#0      GTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCG 240
consensus_10467#1      ------------------------------------------------------------
                                                                                   

consensus_10467#0      CCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAA 300
consensus_10467#1      ------------------------------------------------------------
                                                                                   

consensus_10467#0      ATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGT 360
consensus_10467#1      ------------------------------------------------------------
                                                                                   

consensus_10467#0      TGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTT 420
consensus_10467#1      ------------------------------------------------------CTCGTG 6
                                                                              * ** 

consensus_10467#0      TTGG-TTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGC 479
consensus_10467#1      CCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATCGATTGC 66
                         *  **  *      *************** *********** ****************

consensus_10467#0      TTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGC 539
consensus_10467#1      TTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGGANAA-C 125
                       ******************* *************** **** *** ********** ** *

consensus_10467#0      ATGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGG 599
consensus_10467#1      NTGAAACG-CGGCGAAGA-CNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGGAAG 183
                        *** *** ****** ** * ***** **** ** ** ************ ** **** *

consensus_10467#0      CGTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG---------------- 643
consensus_10467#1      CGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNCCGC 243
                       ***************** **** ****** * ***** * ***                 

consensus_10467#0      ------------------------------------------------------------
consensus_10467#1      CGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGTCTG 303
                                                                                   

consensus_10467#0      --------------------
consensus_10467#1      GCGAAAACCACCCCCACCAC 323