cluster # 1048

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Oryza sativa
cluster # 1048 cluster # 1048 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1048#0 length = 474 sequences # 1

consensus_1048#1 length = 415 sequences # 1

consensusID : consensus_1048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAATTTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCCAAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACCCCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTTTTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCCCCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTTTGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC]

[+] EMBL CF335322             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAATTTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCCAAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACCCCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTTTTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCCCCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTTTGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC]




>consensus_1048#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAAT
TTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCC
AAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACC
CCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTT
TTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCC
CCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTT
TGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC

consensusID : consensus_1048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [TTCCCAATCACCACTTTCACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCTTACCAAAGGGCAATTTCCCGCCCCTTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACATTTCATTGCCCGTCTTTTTACAACTTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGCACCAAATCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAACATTTGCCCACCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTAAAAAAAAAACCCGTTTTCGTTTTTTTGGGGATGTCCAAAGTGATTTTTTTGCCCC]

[+] EMBL CF318672             [TTCCCAATCACCACTTTCACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCTTACCAAAGGGCAATTTCCCGCCCCTTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACATTTCATTGCCCGTCTTTTTACAACTTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGCACCAAATCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAACATTTGCCCACCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTAAAAAAAAAACCCGTTTTCGTTTTTTTGGGGATGTCCAAAGTGATTTTTTTGCCCC]




>consensus_1048#1
TTCCCAATCACCACTTTCACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCT
TACCAAAGGGCAATTTCCCGCCCCTTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACA
TTTCATTGCCCGTCTTTTTACAACTTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTA
TTCCCTTTGCACCAAATCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCA
ATCCCCTTTCCAAACATTTGCCCACCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTA
AAAAAAAAACCCGTTTTCGTTTTTTTGGGGATGTCCAAAGTGATTTTTTTGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1048#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_1048#1      ---------------------------------TTCCCAATCACCACTTTCACCTGAAAA 27
                                                       **     *      ***    *     

consensus_1048#0      TTTTTTTTTTTTTTTTTTGGGGAAAAAATTTGAACAAAAAAATTTTGGGGCCCCAAAAAT 120
consensus_1048#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 87
                                            ******    ** *******            ***** 

consensus_1048#0      TTAAAAAAAATTTTTTCCTCTTTTACCCCTTTAAAGGGCCAAGGGGGAAATTCCGGGCCC 180
consensus_1048#1      AAAAAAAAAAAAAACCCCTGTCTTGGCTTTCCTTA---CCAAAGGGCAATTTCCCGCCCC 144
                        ********      *** * **  *  *    *   **** *** ** **** * ***

consensus_1048#0      AAAAAAAAAATCCCCCCTTAAGGGGGGGGTTTAAAAAAAACGGGGCCCGGTTTTAAAACC 240
consensus_1048#1      TTAAATTAATTTCCCCTTTTAGGGATTCTTTTTACATTTCATTGCCCGTCTTTTTACAAC 204
                        ***  ** * **** ** ****     *** * *       * **   **** * * *

consensus_1048#0      CCGGGAGGGGGAAAAACCCGGGGGTCCCCCAATAAAAAGCCTTGGGAAAAAACCCCCTTT 300
consensus_1048#1      TTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGCACCAAATCCCCTTT 264
                         ***   ****** **  *   * *******  *   **** * *  *** *******

consensus_1048#0      TTCCCAGGGGGGGAAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATGGGCCCC 360
consensus_1048#1      TCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAACATTTGCCCA 324
                      * ****   **   ** *  **************** ************* **  **** 

consensus_1048#0      CCTTTTATTTCGGGGGGTTAAGGGTTCCCCCCTTAAAAAAAAAAACCCCCTTCCCCTTTT 420
consensus_1048#1      CCCTTTACTTCCGGAATTTAAAGGTTTACCCCTTTAAAAAAAAAACCCGTTTTCGTTTTT 384
                      ** **** *** **   **** ****  ****** *************  ** *  ****

consensus_1048#0      TGGGGGGGGACCAAAAAAAATTTTTTCCCCCCCCGGGGCAAAGAGGGGGAACCC 474
consensus_1048#1      TTGGGGATGTCCAAAGTGATTTTTTTGCCCC----------------------- 415
                      * ****  * *****   * ****** ****