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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1259 fasta sequence
[TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGCACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCTTGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAGGTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAAAGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGC-AGCA-CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA---TTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA]
[+] EMBL AK106396 [TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGCACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCTTGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAGGTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAAAGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGA ]
[+] EMBL AK106169 [ ATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAGAATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACATTAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCGTAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAAACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAGTTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGGTAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAACAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGC AGCA CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCA ]
[+] EMBL BQ907405 [ ccgtGCTGGGGACCAAGCACCCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTA CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATAaaaaaaa ]
[-] EMBL BE039689 [ TGGGGAGC AGCA CCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTAT ]
[+] EMBL AU029453 [ gt CCGGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTTTCCCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTTTTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCCAAAAAAAA]
consensusID : consensus_10497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence
[ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCT-TCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA-TTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA]
[+] EMBL BP184442 [ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGATGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGACTGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGGTGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCT TCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATA TTTTTTTTTTGTT ]
[+] EMBL AU083380 [ gtTTCTGGAGTTGGTGATAGTAACCGTGGTGTTGTTGGAGGCTGGGGAACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATCCAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAGCGGGTGGGGAGCTNTCC CCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTAGATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCACGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10497#0 TAGTTCTAGGGGACCATCATTTCTGACACTTACTCTGAAAATTTTTGATGGTGTCCTTGC 60
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 ACACAAGGAGATAACTGAAGGTGGAAAGGATCATAAAGATATTACAAGCTTGCTTCGCCT 120
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 TGGAAAAACATTGACAATTGATAATGAAACTTTTGAAGATCTTGATGAGGTTATAGACAG 180
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 GTACGTGGATCCATTGGTAGGCCACCTGATGAGCATGCTTTTGTACCGCAAATTCAAGAA 240
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 AGGATCAAAAAGTGAGGTTGATGAGATGTTAAGGGCTGAGAAATCAGAGAATCCTATGAG 300
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 AATAGTGTATTGTTTCGGCATATCTCATGAGCATCCAGGCACATTTATTTTATCTTACAT 360
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 TAGGAGTACAAATCCACATCACGAGTATATTGGGTTATACCCAAAGGGCTTTAGATTTCG 420
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 TAAGAGGGACTTTGACAATATTGATCGCCTAGTGTCCTATTTCCAGAAGCATATTGACAA 480
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 ACCACCACCTGATGCTGGTCCATCAATGCGAAATGTTGCTGCAATGGTGCCTATGAAAAG 540
consensus_10497#1 ------------------------------------------------------------
consensus_10497#0 TTCAGGTTGGGGTAATGGTGGTGGCACTGGTGGTGGAAATGATGGATGGAGAGGAGATGG 600
consensus_10497#1 --------------------------------ATGACGACGGCGACGACGACGACGACCT 28
** * * * * **
consensus_10497#0 TAACAACGACAGGGATAGACCTTTCTCTGGAAGATCAGGAGGCAGGTTTGATTCAAGGAA 660
consensus_10497#1 TGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGG 88
* * ** * * * ** *** ** *** * * *
consensus_10497#0 CAGCTCTGGTGGTCGTGGACGTGGGCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA 720
consensus_10497#1 CGTGCCCGCCGGCGGCGAGCCAGACCGCGGGCGTGGTAGAGGTAACTTTGGCAGTGATGA 148
* * * ** * * * * ***********************************
consensus_10497#0 TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC 780
consensus_10497#1 TGGTGGCGGCGGAGGTTGGAGTGGTGGCGGTGGCGGTGGCGGCAACAGTGGGGGATGGAC 208
************************************************************
consensus_10497#0 TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG 840
consensus_10497#1 TGACAATATTGGAAGTGGCGGAGGTGGATGGGGCACAGGTGGTGGTTCCTCGTGGGCTGG 268
************************************************************
consensus_10497#0 TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG 900
consensus_10497#1 TGGTGGCGACGGAGGTTCTGGAGGTGGTGATAGTAACCGTGGTGGTGGTGGAGGCTGGGG 328
************************************************************
consensus_10497#0 AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC 960
consensus_10497#1 AACACCCGCTGGTGGTTCTGATGGCGGCGGCGGTGGCTGGGGAGCAGCACCCGGTGGATC 388
************************************************************
consensus_10497#0 CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG 1020
consensus_10497#1 CAACGATGCCCCAGGATGGGGCAGCGGCAAAAAGGCGGTCCCAGCACAGGATGGTGGTAG 448
************************************************************
consensus_10497#0 CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA 1080
consensus_10497#1 CGGGTGGGGAGCTTCCGCCGGCGGCGGCAGCGGTGGCTGGAACTAGTCAAAGAACTGCTA 508
************************************************************
consensus_10497#0 GATGAAATATTTTTTTTTTTGTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA 1140
consensus_10497#1 GATGAAATATTTTTTTTTT-GTTTTCTGGACCCTCTTCTATATCTGGTAATTGCGCTCCA 567
******************* ****************************************
consensus_10497#0 CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAATCTGCTACTGAATGCCGCTGGTT 1200
consensus_10497#1 CGGGAGAAAAATTGTCACTGTTCGGGGACCCTAGTAAAAAAAAAAAA------------- 614
************************************* *
consensus_10497#0 TTATACATTTTGGACGGCCTTATTTTGAATGCATGTACAGCTTAAGCACCAAAAAAAAA 1259
consensus_10497#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||