cluster # 1060

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Oryza sativa
cluster # 1060 cluster # 1060 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1060#0 length = 562 sequences # 1

consensus_1060#1 length = 544 sequences # 1

consensusID : consensus_1060#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCATGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGC]

[+] EMBL CF326083             [CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCATGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGC]




>consensus_1060#0
CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCA
TGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGT
ACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCA
ATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCT
AAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACA
GGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTG
ACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAA
CTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGA
GCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAG
AGCATGCCATCGTCGCCCATGC

consensusID : consensus_1060#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [AAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAGAGCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTGAGACA]

[-] EMBL AK111391             [AAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAGAGCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTGAGACA]




>consensus_1060#1
AAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCT
CTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTG
GATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGA
TTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCT
GATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCC
TGAAGACACGTCAAAAATCCCCAACTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAG
CACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGA
GCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAGA
GCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTGA
GACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1060#0      CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCA 60
consensus_1060#1      ------------------------------------------------------------
                                                                                  

consensus_1060#0      TGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGT 120
consensus_1060#1      ------------------------------------AAGGTTGTATCTTTATTCAGTTGT 24
                                                          ************************

consensus_1060#0      ACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCA 180
consensus_1060#1      ACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCA 84
                      ************************************************************

consensus_1060#0      ATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCT 240
consensus_1060#1      ATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCT 144
                      ************************************************************

consensus_1060#0      AAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACA 300
consensus_1060#1      AAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACA 204
                      ************************************************************

consensus_1060#0      GGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTG 360
consensus_1060#1      GGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTG 264
                      ************************************************************

consensus_1060#0      ACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAA 420
consensus_1060#1      ACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAA 324
                      ************************************************************

consensus_1060#0      CTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGA 480
consensus_1060#1      CT-------------------------CTGCACCATTGCCGATGCTACGTCCTTCCCTGA 359
                      **                         *********************************

consensus_1060#0      GCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAG 540
consensus_1060#1      GCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAG 419
                      ************************************************************

consensus_1060#0      AGCATGCCATCGTCGCCCATGC-------------------------------------- 562
consensus_1060#1      AGCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAG 479
                      **********************                                      

consensus_1060#0      ------------------------------------------------------------
consensus_1060#1      AGCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTG 539
                                                                                  

consensus_1060#0      -----
consensus_1060#1      AGACA 544