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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1254 fasta sequence
[CCTCCTCCCTTCCTCTCTTCTTTCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCGGCGGCGGCGGCGAGGGATTTCGCCGGCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGTCGGTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGCCACCGCCCCGCAGCCTGTGTCCTCTCCATCCGCCGCAGCCGGCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGGCGGCG-AGGGGGAAGGGGAAGGGCAA-GGGAAAGGGCCGCCT-CGCCAAGACGCCCAGGCGCTCCGATGACCCCGGCGACCTCCCCCGCCGCCGCAGCAAGCCCAGCGACAGGTTCCTCAAGCTGCTCCGCAAGCGCGCCCGCGACTACAACTCCGACGACTCCGACGACGAGGAGCGCCTCTCGGATGAGGACGAGGAGGAGGAGGGGGCTTCCGGCTCCGGTGACGACGAGGCCGCCGGCGCGGTGACCAGGTTCGAGCAGGGGTGCCGCGCGTTCCGCGTCGCCTTCACGAAGATCATGGCCAAGAAGCTCCCCGACGACCCACTGGGTCCAATTCTTTCGGCGCACAAGAAGCTGGTCGCCGCCAAGTTGGCCGAGGACGCAGAAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAGCGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAGGAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCATTGATGAATGTGATGGCTAATGCACGGCACGGG]
[+] EMBL AK073284 [CCTCCTCCCTTCCTCTCTTCTTTCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCGGCGGCGGCGGCGAGGGATTTCGCCGGCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGTCGGTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGCCACCGCCCCGCAGCCTGTGTCCTCTCCATCCGCCGCAGCCGGCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGGCGGCG AGGGGGAAGGGGAAGGGCAA GGGAAAGGGCCGCCT CGCCAAGACGCCCAGGCGCTCCGATGACCCCGGCGACCTCCCCCGCCGCCGCAGCAAGCCCAGCGACAGGTTCCTCAAGCTGCTCCGCAAGCGCGCCCGCGACTACAACTCCGACGACTCCGACGACGAGGAGCGCCTCTCGGATGAGGACGAGGAGGAGGAGGGGGCTTCCGGCTCCGGTGACGACGAGGCCGCCGGCGCGGTGACCAGGTTCGAGCAGGGGTGCCGCGCGTTCCGCGTCGCCTTCACGAAGATCATGGCCAAGAAGCTCCCCGACGACCCACTGGGTCCAATTCTTTCGGCGCACAAGAAGCTGGTCGCCGCCAAGTTGGCCGAGGACGCAGAAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAGCGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAGGAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCATTGATGAATGTGATGGCTAATGCACGGCACGGG]
[+] EMBL AU062471 [ tatnCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCGGCGGCGGCGGCGAGGGATTTCGCCGTCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGTCGNTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGNCACCGTCCCGCAGCCTGTGTCCTCTCCATCCGNCGAAGACGNCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGNCGGCGAAGGNGGAAGGGGAAGGGCAAGGGGAAAGGGCCGCCTNGGCCAAG ]
[+] EMBL CB000693 [ gAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAGCGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAGGAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCGCAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGAACAATAGCAAAGACGAAGACGAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGA ]
consensusID : consensus_10642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[TCTTCAAACACATCTATTTACAGTTGGAGGGATTTCATATGGAGGGAGTGTTCAACAATGAGTAAATCTGACATCATTTAAANAAGCACCCGTATCCTCAGCATTAGCATTAAAGAATATACGTGTTAAGAATATACAAAGTTGGACTGTGTTTCTGTATGTGTACCTGTGATTCATCAGATATATAATAAACTATCTACTGTTTCTCATGCCATAAGTTAACTAAATCAGATGTAAAATGATTTAACCTGTGACAAGTTGGCTGCTCTTGTGCGCCATATCTGAATTTCATTTNATTTCGGAACATATTTTATACATATTTTTATGTATTTGGAACTTAAGAAGCTCTTGGATATTTCTCACACTTGATGTGCTTCAGAACAATAGCAAAGACGAAGACGAAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGC---TTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCAAAAAA]
[+] EMBL AU101166 [TCTTCAAACACATCTATTTACAGTTGGAGGGATTTCATATGGAGGGAGTGTTCAACAATGAGTAAATCTGACATCATTTAAANAAGCACCCGTATCCTCAGCATTAGCATTAAAGAATATACGTGTTAAGAATATACAAAGTTGGACTGTGTTTCTGTATGTGTACCTGTGATTCATCAGATATATAATAAACTATCTACTGTTTCTCATGCCATAAGTTAACTAAATCAGATGTAAAATGATTTAACCTGTGACAAGTTGGCTGCTCTTGTGCGCCATATCTGAATTTCATTTNATTTCGGAACATATTTTATACATATTTTTATGTATTTGGAACTTAAGAAGCTCTTGGATATTTCTCACACTTGATGTGCTTCAGAACAATAGCAAAGACGAAGACGAAACCTGGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGC TTTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCATTGTTTCATGCAAAAA ]
[+] EMBL BI799976 [ GGGTGGGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATATGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTTTTGAAGTCGTGTTCTTGTTATGGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCACTGTTTCATGCAAAAAA]
consensusID : consensus_10642#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[GCAGGCCTTCCTCACAGAATTAAGCAAAACATCTANCCAAAGTCAAAAGGGCAAGGCATCTTCCCAACTTTTCTAAGANCAATAGCAAAGACGAAGACGAACCTGGGNGGGCNCCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACNTTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCAAAAAAAAAAAA]
[+] EMBL AU092185 [GCAGGCCTTCCTCACAGAATTAAGCAAAACATCTANCCAAAGTCAAAAGGGCAAGGCATCTTCCCAACTTTTCTAAGANCAATAGCAAAGACGAAGACGAACCTGGGNGGGCNCCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCAGACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGAATAGGCAATAGATTCACCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCTTTGAAGTCGTGTTCTTGTTATTGACNTTGTAAAGCGATATTTGGTTCAAATTTGCAAGTTAAGTTTTCTTATCAAAAAAAAAAAA]
consensusID : consensus_10642#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[ACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGGTAGCTATGATAATTCTCTCTTTACTCAAAAACACTCCATTTCATTTTATAGACTTCTGTTGCTAAGTATTTGTGTTGTATCTTCAAATTCAAATTAGTTGTTCTCAGAGGCATATCTGGTGGAACTGTTGTNCAAATTAGTTATGCNAATTTTGATGCAATTACAGCCTCAATAAATCCAAACGGGACACTGCAATACAAGT]
[+] EMBL C72695 [ACGCCAAAGTGTTGGCAAAAGAAACAAAGCAGGCCTTCCTCACAGAATTAAGCAAAACATCTAACCAAAGTCAAAAGGGCAAGGCATCTTCCAACTTTTCTAAGGTAGCTATGATAATTCTCTCTTTACTCAAAAACACTCCATTTCATTTTATAGACTTCTGTTGCTAAGTATTTGTGTTGTATCTTCAAATTCAAATTAGTTGTTCTCAGAGGCATATCTGGTGGAACTGTTGTNCAAATTAGTTATGCNAATTTTGATGCAATTACAGCCTCAATAAATCCAAACGGGACACTGCAATACAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10642#0 CCTCCTCCCTTCCTCTCTTCTTTCCTCGCCGACGACGCGATTCCCCACCGGCGTACGGCG 60
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GCGGCGGCGGCGAGGGATTTCGCCGGCCAGCTAGCCCCATCCTCAACAAAATCGAGGGGT 120
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 CGGTTGCTCTCCCGGTGGAAGAGCCCCATGGCCTCCGCCACCGCCCCGCAGCCTGTGTCC 180
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 TCTCCATCCGCCGCAGCCGGCGCCGCGTCGAACAACCCCCACAAGCGCAAGAAGCCGGCG 240
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GCGAGGGGGAAGGGGAAGGGCAAGGGAAAGGGCCGCCTCGCCAAGACGCCCAGGCGCTCC 300
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GATGACCCCGGCGACCTCCCCCGCCGCCGCAGCAAGCCCAGCGACAGGTTCCTCAAGCTG 360
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 CTCCGCAAGCGCGCCCGCGACTACAACTCCGACGACTCCGACGACGAGGAGCGCCTCTCG 420
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GATGAGGACGAGGAGGAGGAGGGGGCTTCCGGCTCCGGTGACGACGAGGCCGCCGGCGCG 480
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ------------------------------------------------------------
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GTGACCAGGTTCGAGCAGGGGTGCCGCGCGTTCCGCGTCGCCTTCACGAAGATCATGGCC 540
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ----------------------------------------------------------TC 2
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 AAGAAGCTCCCCGACGACCCACTGGGTCCAATTCTTTCGGCGCACAAGAAGCTGGTCGCC 600
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 TTCAAACACATCTATTTACAGTTGGAGGGATTTCATATGGAGGG-AGTGTTCAACAATGA 61
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GCCAAGTTGGCCGAGGACGCAGAAGAACACAAGCCCAAGGGAGAAGGCCGCAGGGAAAAG 660
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 GTAAATCTGACATCATTTAAANAAGCACCCGTATCCTCAGCATTAGCATTAAAGAATATA 121
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 CGCATGGCTGCAGAGAAGGGCCATGTCATTCCCACAAATCATTTAGATAGTAAAGAGAAG 720
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 CGTGTTAAGAATATACAAAGTTGGACTGTGTTTCTGTAT-GTGTACCTGTGATTCATCAG 180
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 GAGCTCATCAAAATCGCAACCCAAGGGGTCGTCAGGTTGTTCAACTCGGTAAGCAAGGCG 780
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 ATATATAATAAACTATCTACT-----GTTTCTCATGCCATA-AGTTAACTAAATCAGATG 234
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 CAGAATTGTCGGAAAGGTTTGAACCCATCAAGGAGTAAAGACGCCAAAGTGTTGGCAAAA 840
consensus_10642#2 ------------------------------------------------------------
consensus_10642#1 TAAAATGATTTAACCTGTGACAAGTTGGCTGCTCTTGTGCGCCATATCTGAATTTCATTT 294
consensus_10642#3 ----------------------------------------ACGCCAAAGTGTTGGCAAAA 20
consensus_10642#0 GAAA-CAAAGCAGGCCTTCCTCACAGAATTAAGCAAA-ACATCTAACCAAAGTCAAAAGG 898
consensus_10642#2 ---------GCAGGCCTTCCTCACAGAATTAAGCAAA-ACATCTANCCAAAGTCAAAAGG 50
consensus_10642#1 NATTTCGGAACATATTTTATACATATTTTTATGTATTTGGAACTTAAGAAGCTCTT--GG 352
consensus_10642#3 GAAA-CAAAGCAGGCCTTCCTCACAGAATTAAGCAAA-ACATCTAACCAAAGTCAAAAGG 78
** ** ** * *** * * * ** ** ** **
consensus_10642#0 GCAAGGCATCTTCC-AACTTTTCTAAGAACAATAGCAAAGACGAAGACGAA-CCTGGGTG 956
consensus_10642#2 GCAAGGCATCTTCCCAACTTTTCTAAGANCAATAGCAAAGACGAAGACGAA-CCTGGGNG 109
consensus_10642#1 ATATTTCTCACACTTGATGTGCTTCAGAACAATAGCAAAGACGAAGACGAAACCTGGGTG 412
consensus_10642#3 GCAAGGCATCTTCC-AACTTTTCTAAG-GTAGCTATGATAATTCTCTCTTTACTCAAAAA 136
* * * * * * ** * * * * *
consensus_10642#0 GGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCA 1016
consensus_10642#2 GGCNCCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCA 169
consensus_10642#1 GGCACCCCTACGCGAGACATACATGCTTGGGTCGAAATTGAAAGATTGGGATAAAATGCA 472
consensus_10642#3 CACTCCATTTCATTTTATAGACTTCTGTTGCTAAGTATTTGTGTTGTATCTTCAAATTCA 196
* ** * * * * ** * * * * *** * * **** **
consensus_10642#0 GACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGA 1076
consensus_10642#2 GACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGA 229
consensus_10642#1 GACCTCTGATGTTGTGAATGAACAAACGGAGATCCCTTTGGACGACTCTTCTGATGAGGA 532
consensus_10642#3 AATTAGTTGT-TCTCAGAGGCATATCTGGTGGAACTGTTGTNCAAAT-TAGTTATGCNAA 254
* * * * * * * * ** * * *** * * * * * *** *
consensus_10642#0 ATAGGCAATAGATTCA-CCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCT 1135
consensus_10642#2 ATAGGCAATAGATTCA-CCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCT 288
consensus_10642#1 ATAGGCAATAGATTCA-CCTGAGTGAGTTGAAGCAGCATTTGGGACAATGTTCCTGTGCT 591
consensus_10642#3 TTTTGATGCAATTACAGCCTCAATAAATCCAAACGGGACACTG--CAATACAAGT----- 307
* * * * ** *** * * * * ** * * * * **** *
consensus_10642#0 TTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTT 1195
consensus_10642#2 TTGAAGTCGTGTTCTTGTTATTGACNTTGTAAAGCGATATTTGGTTCAAATTTGCAAGTT 348
consensus_10642#1 TTGAAGTCGTGTTCTTGTTATTGACATTGTAAAGCGATATTTGGTTCAAATTTGCAAGTT 651
consensus_10642#3 ------------------------------------------------------------
consensus_10642#0 AAGTTTTCTTATCATTGTTTCATGCATTGATGAATGTGATGGCTAATGCACGGCACGGG 1254
consensus_10642#2 AAGTTTTCTTATCAAAAAAAAAAAA---------------------------------- 373
consensus_10642#1 AAGTTTTCTTATCATTGTTTCATGCAAAAAA---------------------------- 682
consensus_10642#3 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||