cluster # 10744

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Oryza sativa
cluster # 10744 cluster # 10744 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10744#0 length = 1272 sequences # 7

consensus_10744#1 length = 328 sequences # 1

consensusID : consensus_10744#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1272
fasta sequence

                              [GGCATGGGTGTCGAAATGAGCGCGGATGCTAAAGGGGATCAGGGGAGTGGTGCTGGCCAGGATGAGCCGGTGAAGAAGAAGCGGGGGAGGCCGAGGAAGTATAAGCCTGATGGGGCGGTCACGCTGGGGCTCTCGCCGTCTTCGTCGACGCCTCACTCGTCGACCTCGGCGATGGGTACAATGGTGACCACACCAGGCTCAGGGTTTGGGTCGGGGGCAGGATCGGGGGGTTCGGGGTCTGGTGCCCTTACAGAGAAGCGTGGCCGAGGGCGGCCACCTGGGTCTGGAAAGATGCAGCAGTTGGCTTCTCTTGGAAAATGGTTTCTTGGTTCTGTTGGAACAGGTTTTACTCCTCATGTGATTATTATTTCACCAGGAGAGGATGTTGCTGCCAGGATAATGTCCTTCTCACAACAGGGCCCAAGGGCAGTGTGCATCATCTCAGCGACAGGAGCTGTATCCACAGCAACCCTTCATCAGGATTCAAACTCTGGTGGTGTGGTTACATATGAGGGTCGATTTGAAATCCTGTGCCTGTCTGGATCATATTTGGTGATAGAGGAAGGTGGTTCGCGAACCCGGAGTGGAGGCCTCTGCATAGCTCTGTGTGGCCCTGACCACAGGGTTATTGGTGGGAGTGTAGGTGGAGTCCTGACAGCAGCTGGAACTGTTCAGGTGATAGTGGGGAGCTTCATGTATGGTGGGACAAAGAAAAATAAAGCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGGCGGTGAGGAGGAGACCCCCACAATGGCACTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGGCTGGGTTGATGAGGCAGATGGACTCAAGAACTCCAAACATCGACATCAACTCTATTCGCGAGTAATGTGTATTATTGCTGGAAGGAAGGAGCACCACCTATATATCTATCTCTGACTGACGGAATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGCAACGCGATGCGCTAACTTGCTGTAGGTGTAAGAGGAAGAGAGTTGTTTGAGAAATGATGTTGCTGGATGCTGAGGTATATGTCAGTGCTATGTTAGGAACTCCTCTACATACTAAGTATTAGAATATGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGGATCGTACCCTATTATATTATATAGAGGAAGAAAAAAGAACCTGGGGATTTATTATTGAGTTGGTACCTGA]

[+] EMBL AK066031             [GGCATGGGTGTCGAAATGAGCGCGGATGCTAAAGGGGATCAGGGGAGTGGTGCTGGCCAGGATGAGCCGGTGAAGAAGAAGCGGGGGAGGCCGAGGAAGTATAAGCCTGATGGGGCGGTCACGCTGGGGCTCTCGCCGTCTTCGTCGACGCCTCACTCGTCGACCTCGGCGATGGGTACAATGGTGACCACACCAGGCTCAGGGTTTGGGTCGGGGGCAGGATCGGGGGGTTCGGGGTCTGGTGCCCTTACAGAGAAGCGTGGCCGAGGGCGGCCACCTGGGTCTGGAAAGATGCAGCAGTTGGCTTCTCTTGGAAAATGGTTTCTTGGTTCTGTTGGAACAGGTTTTACTCCTCATGTGATTATTATTTCACCAGGAGAGGATGTTGCTGCCAGGATAATGTCCTTCTCACAACAGGGCCCAAGGGCAGTGTGCATCATCTCAGCGACAGGAGCTGTATCCACAGCAACCCTTCATCAGGATTCAAGCTCTGGTGGTGTGGTTACATATGAGGGTCGATTTGAAATCCTGTGCCTGTCTGGATCATATTTGGTGATAGAGGAAGGTGGTTCGCGAACCCGGAGTGGAGGCCTCTGCATAGCTCTGTGTGGCCCTGACCACAGGGTTATTGGTGGGAGTGTAGGTGGAGTCCTGACAGCAGCTGGAACTGTTCAGGTGATAGTGGGGAGCTTCATGTATGGTGGGACAAAGAAAAATAAAGCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGGCGGTGAGGAGGAGACCCCCACAATGGCACTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGCCTGGGTTGATGAGGCAGATGGACTCAAGAACTCCAAACATCGACATCAACTCTATTCGCGAGTAATGTGTATTATTGCTGGAAGGAAGGAGCACCACCTATATATCTATCTCTGACTGACGGAATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGCAACGCGATGCGCTAACTTGCTGTAGGTGTAAGAGGAAGAGAGTTGTTTGAGAAATGATGTTGCTGGATGCTGAGGTATATGTCAGTGCTATGTTAGGAACTCCTCTACATACTAAGTATTAGAATATGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGGATCGTACCCTATTATATTATATAGAGGAAGAAAAAAGAAC                              ]
[+] EMBL CB676265             [GGCATGGGTGTCGAAATGAGCGCGGATGCTAAAGGGGATCAGGGGAGTGGTGCTGGCCAGGATGAGCCGGTGAAGAAGAAGCGGGGGAGGCCGAGGAAGTATAAGCCTGATGGGGCGGTCACGCTGGGGCTCTCGCCGTCTTCGTCGACGCCTCACTCGTCGACCTCGGCGATGGGTACAATGGTGACCACACCAGGCTCAGGGTTTGGGTCGGGGGCAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA753642             [                                                                                                                                                                                                                                   GGGTNCGGGGTCNGGTGCCCNNACAGAGAAGCGTGGCCGAGGGCGGCCACCTGGGTCTGGAAAGATGCAGCAGTTGGCTTCTCTTGGAAAATGGTTTCTTGGTTCTGTTGGAACAGGTTTTACTCCTCATGTGATTATTATTTCACCAGGAGAGGATGTTGCTGCCAGGATAATGTCCTTCTCACAACAGGGCCCAAGGGCAGTGTGCATCATCTCAGCGACAGGAGCTGTATCCACAGCAACCCTTCATCAGGATTCAAACTCTGGTGGTGTGGTTACATATGAGGGTCGATTTGAAATCCTGTGCCTGTCTGGATCATATTTGGTGATAGAGGAAGGTGGTTCGCGAACCCGGAGTGGAGGCCTCTGCATAGCTCTGTGTGGCCCTGACCACAGGGTTATTGGTGGGAGTGTAGGTGGAGTCCTGACAGCAGCTGGAACTGTNCAGGTGATAGTGGGGAGCTTCATGTATGGTGGGACAAAGAAAAATAAAGCGAAAGCTGAGCAAGAGACNGAGAATAACGAAGAGCCAA TGGCCGTGAGGAGGAGA CCCCACCATGGCGCTGCC GATCCCAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB672847             [                                                                                                                                                                                                                                                                                                                                                                                                                                        GGGCAGTGTGCATCATCTCAGCGACAGGAGCTGTATCCACAGCAACCCTTCATCAGGATTCAAACTCTGGTGGTGTGGTTACATATGAGGGTCGATTTGAAATCCTGTGCCTGTCTGGATCATATTTGGTGATAGAGGAAGGTGGTTCGCGAACCCGGAGTGGAGGCCTCTGCATAGCTCTGTGTGGCCCTGACCACAGGGTTATTGGTGGGAGTGTAGGTGGAGTCCTGACAGCAGCTGGAACTGTTCAGGTGATAGTGGGGAGCTTCATGTATGGTGGGACAAAGAAAAATAAAGCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGGCGGTGAGGAGGAGACCCCCACAATGGCACTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGGCTGGGTTGATGAGGCAGATGGACTCAAGAACTCCAAACATCGACATCAACTCTATTCGCGAGTAATGTGTATTATTGCTGGAAGGAAGGAGCACCACCTATATATCTATCTCTGACTGACGGAATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGCAACGCGATGCGCTAACTTGCTGTAGGTGTAAGAGGAAGAGAGTTGTTTGAGAAATGATGTTGCTGGATGCTGAGGTATATGTCAGTGCTATGTTAGGAACTCCTCTACATACTAAGTATTAGAATATGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGGATCGTACCCTATTATATTATATAGAGGAAGAAAAAAGAACCTGGGGATTTATTATTGAGTTGGTACCTGA]
[-] EMBL CB664114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAAGCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGGCGGTGAGGAGGAGACCCCCCCAATGGCACTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGGCTGGGTTGATGAGGCAGATGGACTCAAGAACTCCAAACATTGACATCAACTTTATTGGGGAGTAATGTGTATTATTGCTGGAAGGAAGGAGCCCCCCCTATATATTTTTTTTTGACTGACGGAATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGCAACGCGATGCGCTAACTTGCTGTAGGTGTAAGAGGAAGAAAGTTTTTTGAGAAATAATGTTGCTGGATGCTGAGGTATATGTCAGTGCTATGTTAGGAACTCCTCTCCATACTAAGTATTAGAATATGAATGTTATGGGGGGGTACTGTGAATTTGCTGCATTTGCATTTGCGGTGTTGTATGAAAATGAAGGATCCGGATCGTCCCCTATTTTTTTTTTTTGGGGA                                          ]
[+] EMBL BI806424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACTCC AACATCGACATCAACTCTATTCGCGAGTAATGTGTATTATTGCTGGAAGGAAGGAGCACCACCTATATATCTATCTCTGACTGACGGAATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGC ACGCGATGCGCTAACTTGCTGTAGGTGTAAGAGGAAGAGAGTTGTTTGAGAAATGATGTTGCTGGATGCTGAGGTATATGTCAGTGCTATGTTAGGAACTCCTCTACATACTAAGTATTAGAATATGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGGATCGTACCCTATTATATTATATAGAGGAAGAAAAAAGAACCTGGGGATTTATTAaaaaaaaaa       ]
[-] EMBL D43471               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGTAAGAGGCAGAGAGTTGTTTGANAAATGATGTTGCTGGATGCTGAGGTATATGNCAGTGCTATG TANGAACNCCTCTACATACTAAGTATNAGAATATGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGAACCGGATCGTACCC                                                             ]




>consensus_10744#0
GGCATGGGTGTCGAAATGAGCGCGGATGCTAAAGGGGATCAGGGGAGTGGTGCTGGCCAG
GATGAGCCGGTGAAGAAGAAGCGGGGGAGGCCGAGGAAGTATAAGCCTGATGGGGCGGTC
ACGCTGGGGCTCTCGCCGTCTTCGTCGACGCCTCACTCGTCGACCTCGGCGATGGGTACA
ATGGTGACCACACCAGGCTCAGGGTTTGGGTCGGGGGCAGGATCGGGGGGTTCGGGGTCT
GGTGCCCTTACAGAGAAGCGTGGCCGAGGGCGGCCACCTGGGTCTGGAAAGATGCAGCAG
TTGGCTTCTCTTGGAAAATGGTTTCTTGGTTCTGTTGGAACAGGTTTTACTCCTCATGTG
ATTATTATTTCACCAGGAGAGGATGTTGCTGCCAGGATAATGTCCTTCTCACAACAGGGC
CCAAGGGCAGTGTGCATCATCTCAGCGACAGGAGCTGTATCCACAGCAACCCTTCATCAG
GATTCAAACTCTGGTGGTGTGGTTACATATGAGGGTCGATTTGAAATCCTGTGCCTGTCT
GGATCATATTTGGTGATAGAGGAAGGTGGTTCGCGAACCCGGAGTGGAGGCCTCTGCATA
GCTCTGTGTGGCCCTGACCACAGGGTTATTGGTGGGAGTGTAGGTGGAGTCCTGACAGCA
GCTGGAACTGTTCAGGTGATAGTGGGGAGCTTCATGTATGGTGGGACAAAGAAAAATAAA
GCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGGCGGTGAGGAGGAGACC
CCCACAATGGCACTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGGCT
GGGTTGATGAGGCAGATGGACTCAAGAACTCCAAACATCGACATCAACTCTATTCGCGAG
TAATGTGTATTATTGCTGGAAGGAAGGAGCACCACCTATATATCTATCTCTGACTGACGG
AATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGCAACGCGATGCGCTAACT
TGCTGTAGGTGTAAGAGGAAGAGAGTTGTTTGAGAAATGATGTTGCTGGATGCTGAGGTA
TATGTCAGTGCTATGTTAGGAACTCCTCTACATACTAAGTATTAGAATATGAATGTTATG
GTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCC
GGATCGTACCCTATTATATTATATAGAGGAAGAAAAAAGAACCTGGGGATTTATTATTGA
GTTGGTACCTGA

consensusID : consensus_10744#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [CACCAGTGAGGTGTCGCATTTGGGTAGCAATTGTCAAATGTCACACGTCGATGCGCTATACTTGCTGTAGGTGTAAGAGGAAGAGAGNTTGTTTTGAGAAANTGANTGNTTGCTGGAGTGACTGAGGTATATGTTCACGGTGNCTATCTGTTATGGAATCTCCTCTACAGTAGCTAAGTATTTAGAATTATTGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGCGATCGTNCCCTATTATATTATATAGAGCGAAGAACAAAGAACCCATGGGGCATTTCACTAAAAA]

[+] EMBL BM038642             [CACCAGTGAGGTGTCGCATTTGGGTAGCAATTGTCAAATGTCACACGTCGATGCGCTATACTTGCTGTAGGTGTAAGAGGAAGAGAGNTTGTTTTGAGAAANTGANTGNTTGCTGGAGTGACTGAGGTATATGTTCACGGTGNCTATCTGTTATGGAATCTCCTCTACAGTAGCTAAGTATTTAGAATTATTGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGCGATCGTNCCCTATTATATTATATAGAGCGAAGAACAAAGAACCCATGGGGCATTTCACTAAAAA]




>consensus_10744#1
CACCAGTGAGGTGTCGCATTTGGGTAGCAATTGTCAAATGTCACACGTCGATGCGCTATA
CTTGCTGTAGGTGTAAGAGGAAGAGAGNTTGTTTTGAGAAANTGANTGNTTGCTGGAGTG
ACTGAGGTATATGTTCACGGTGNCTATCTGTTATGGAATCTCCTCTACAGTAGCTAAGTA
TTTAGAATTATTGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGT
GTTGTATGAGAATGAAGGATCCGCGATCGTNCCCTATTATATTATATAGAGCGAAGAACA
AAGAACCCATGGGGCATTTCACTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10744#0      GGCATGGGTGTCGAAATGAGCGCGGATGCTAAAGGGGATCAGGGGAGTGGTGCTGGCCAG 60
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GATGAGCCGGTGAAGAAGAAGCGGGGGAGGCCGAGGAAGTATAAGCCTGATGGGGCGGTC 120
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      ACGCTGGGGCTCTCGCCGTCTTCGTCGACGCCTCACTCGTCGACCTCGGCGATGGGTACA 180
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      ATGGTGACCACACCAGGCTCAGGGTTTGGGTCGGGGGCAGGATCGGGGGGTTCGGGGTCT 240
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GGTGCCCTTACAGAGAAGCGTGGCCGAGGGCGGCCACCTGGGTCTGGAAAGATGCAGCAG 300
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      TTGGCTTCTCTTGGAAAATGGTTTCTTGGTTCTGTTGGAACAGGTTTTACTCCTCATGTG 360
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      ATTATTATTTCACCAGGAGAGGATGTTGCTGCCAGGATAATGTCCTTCTCACAACAGGGC 420
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      CCAAGGGCAGTGTGCATCATCTCAGCGACAGGAGCTGTATCCACAGCAACCCTTCATCAG 480
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GATTCAAACTCTGGTGGTGTGGTTACATATGAGGGTCGATTTGAAATCCTGTGCCTGTCT 540
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GGATCATATTTGGTGATAGAGGAAGGTGGTTCGCGAACCCGGAGTGGAGGCCTCTGCATA 600
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GCTCTGTGTGGCCCTGACCACAGGGTTATTGGTGGGAGTGTAGGTGGAGTCCTGACAGCA 660
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GCTGGAACTGTTCAGGTGATAGTGGGGAGCTTCATGTATGGTGGGACAAAGAAAAATAAA 720
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGGCGGTGAGGAGGAGACC 780
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      CCCACAATGGCACTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGGCT 840
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      GGGTTGATGAGGCAGATGGACTCAAGAACTCCAAACATCGACATCAACTCTATTCGCGAG 900
consensus_10744#1      ------------------------------------------------------------
                                                                                   

consensus_10744#0      TAATGTGTATTATTGCTGGAAGGAAGGAGCACCACCTATATATCTATCTCTGACTGACGG 960
consensus_10744#1      ---------------------------------------------------CACCAGTGA 9
                                                                           **    * 

consensus_10744#0      AATTCCCCGAATCCCCGTGAGTGCGCTTGGTAGCATGCAATGCAACGCGATGCGCTA-AC 1019
consensus_10744#1      GGTGTCGC--ATTTGGGTA---GCAATTGTCAA-ATGTCACACGTC--GATGCGCTATAC 61
                         *  * *  **    **    **  ***  *  ***  *  *  *  ********* **

consensus_10744#0      TTGCTGTAGGTGTAAGAGGAAGAGAGTTG--TTTGAGAAAT-GAT--GTTGCTGGAT--G 1072
consensus_10744#1      TTGCTGTAGGTGTAAGAGGAAGAGAGNTTGTTTTGAGAAANTGANTGNTTGCTGGAGTGA 121
                       ************************** *   *********  **    ********    

consensus_10744#0      CTGAGGTATATGT---CAGTGC---TATGTTAGGAA--CTCCTCTACAT--ACTAAGTAT 1122
consensus_10744#1      CTGAGGTATATGTTCACGGTGNCTATCTGTTATGGAATCTCCTCTACAGTAGCTAAGTAT 181
                       *************   * ***    * ***** * *  **********    ********

consensus_10744#0      T-AGAATA--TGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTG 1179
consensus_10744#1      TTAGAATTATTGAATGTTATGGTGGTGTACTGTGAATCTGCTGCATCTGCATCTGCGGTG 241
                       * *****   **************************************************

consensus_10744#0      TTGTATGAGAATGAAGGATCCG-GATCGTACCCTATTATATTATATAGAG-GAAGAAAAA 1237
consensus_10744#1      TTGTATGAGAATGAAGGATCCGCGATCGTNCCCTATTATATTATATAGAGCGAAGAACAA 301
                       ********************** ****** ******************** ****** **

consensus_10744#0      AGAACCTG-GGGATTTATTATTGAGTTGGTACCTGA 1272
consensus_10744#1      AGAACCCATGGGGCATTTCACTAAAAA--------- 328
                       ******   ***   * * * * *