cluster # 10754

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Oryza sativa
cluster # 10754 cluster # 10754 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10754#0 length = 761 sequences # 7

consensus_10754#1 length = 624 sequences # 1

consensusID : consensus_10754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 761
fasta sequence

                              [TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA-AGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT-ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA-CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC-TGTCTCTGCCGTTTGTATAGTAGCTCGAT-CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGTTGATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA]

[+] EMBL CF291309             [TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK119686             [                      CTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTGCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACA                                                                                                                                             ]
[+] EMBL AK120731             [                           CAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTGCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGC                                                                                              ]
[-] EMBL CF291308             [                            AGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CA756468             [                                                                                                             AAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAG AGANCGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTGCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGTTGAT                                      ]
[-] EMBL CB967284             [                                                                                                                                                                                                                                                    CCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCCATCGATAATAATAAAGGCAGGATGAATTGACCAGGAAAGCCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTCCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCCAATTGCAGGCTCTCAATCAGAATCAGAAACCGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCAC                                                                                            ]
[+] EMBL BM420363             [                                                                                                                                                                                                                                                                                        CTC CCGGCGGCGC GCCGACTCC GCCGCCTCCGCTTC CCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTGACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCCTTGTTCCTGCC AATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAA CACTTGCTTCCAATGTGTAGCACAACAAAGTCTTGTAAATTAAATGTTCTTGTTGATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA]




>consensus_10754#0
TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAG
AGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGG
GCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAG
TCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGAC
TCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCC
CAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTA
ATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATC
GATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCT
CTGTCTCTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGCT
CTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAA
TCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGTT
GATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA

consensusID : consensus_10754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTT]

[+] EMBL BF430797             [TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTT]




>consensus_10754#1
TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGCCATGG
AGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGC
CGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACG
TCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCT
TCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTT
CTCTTGGAGGATTATTAATTACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTC
TCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGACAGGAAA
GGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTC
GATCTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATG
CATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCA
AAGTCTTGTAAATTAAATGTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10754#0      TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAG 60
consensus_10754#1      ------------------------------------------------------------
                                                                                   

consensus_10754#0      AGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAGAAGAAGAA 120
consensus_10754#1      -------TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAA------------ 41
                              *****************************************            

consensus_10754#0      GAAGAAGAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGG 180
consensus_10754#1      ---------------GAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGG 86
                                      *********************************************

consensus_10754#0      GCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAG 240
consensus_10754#1      GCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAG 146
                       ************************************************************

consensus_10754#0      TCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGAC 300
consensus_10754#1      TCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGAC 206
                       ************************************************************

consensus_10754#0      TCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCC 360
consensus_10754#1      TCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCC 266
                       ************************************************************

consensus_10754#0      CAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTA 420
consensus_10754#1      CAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTA 326
                       ************************************************************

consensus_10754#0      ATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATC 480
consensus_10754#1      ATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATC 386
                       ************************************************************

consensus_10754#0      GATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCT 540
consensus_10754#1      GATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCT 446
                       ************************************************************

consensus_10754#0      CTGTCTCT-GTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGC 599
consensus_10754#1      CTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGC 506
                       ******** ***************************************************

consensus_10754#0      TCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTA 659
consensus_10754#1      TCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTA 566
                       ************************************************************

consensus_10754#0      ATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGT 719
consensus_10754#1      ATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTT-- 624
                       **********************************************************  

consensus_10754#0      TGATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA 761
consensus_10754#1      ------------------------------------------