cluster # 1077

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Oryza sativa
cluster # 1077 cluster # 1077 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1077#0 length = 554 sequences # 1

consensus_1077#1 length = 231 sequences # 1

consensusID : consensus_1077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATGGTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANAGAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATTAGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGGACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACTATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATAGACCNCTATCCCNCTATCTAAACCTTCNGGGANATGCATGCCAAAACACCTTCACTCTCATCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATTNATGCNAATCTTGAA]

[+] EMBL AA752092             [TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATGGTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANAGAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATTAGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGGACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACTATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATAGACCNCTATCCCNCTATCTAAACCTTCNGGGANATGCATGCCAAAACACCTTCACTCTCATCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATTNATGCNAATCTTGAA]




>consensus_1077#0
TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAAT
GTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATG
GTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANA
GAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATT
AGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGG
ACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACT
ATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATA
GACCNCTATCCCNCTATCTAAACCTTCNGGGANATGCATGCCAAAACACCTTCACTCTCA
TCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATTN
ATGCNAATCTTGAA

consensusID : consensus_1077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [ATGCTGGGCTTCCGGACTAGTTTTTTAGCACCATGGTGTCACAAAAGGTGATTCAGGGAGAGGCGACCGTGAGACTGCAAATATACAAATCTGGGAGGCGGCGACCGTGATACCCGCAAGAGGTGATTCACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC]

[+] EMBL AI978333             [ATGCTGGGCTTCCGGACTAGTTTTTTAGCACCATGGTGTCACAAAAGGTGATTCAGGGAGAGGCGACCGTGAGACTGCAAATATACAAATCTGGGAGGCGGCGACCGTGATACCCGCAAGAGGTGATTCACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC]




>consensus_1077#1
ATGCTGGGCTTCCGGACTAGTTTTTTAGCACCATGGTGTCACAAAAGGTGATTCAGGGAG
AGGCGACCGTGAGACTGCAAATATACAAATCTGGGAGGCGGCGACCGTGATACCCGCAAG
AGGTGATTCACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAAT
ATATTACAAGCCGACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1077#0      TTTTTTTTTTTTTTTTTTTTTTTNCACCAGTATATATTTACAAATATATATTANAAAAAT 60
consensus_1077#1      ------------------------------------------------------------
                                                                                  

consensus_1077#0      GTATAGCTCTACCAATATATTACAAGCCGACAATTGCACATATACCTAATGCTTCCCATG 120
consensus_1077#1      ------------------------------------------------------------
                                                                                  

consensus_1077#0      GTGAGGCAACATACCAACATGGTGATAGCACAGATAAGAAACATATACAGGCAGAGCANA 180
consensus_1077#1      ------------------------------------------------------------
                                                                                  

consensus_1077#0      GAAGTTAGAGCTGCCTGGTAAATCNAATCGTTTCAGTAAAAGGCATGGAGGTTTGGAATT 240
consensus_1077#1      ------------------------------------------------------------
                                                                                  

consensus_1077#0      AGTAGGAGGAANATTATTAATAGTAAAATCATGGGAACATGTGATCTACCAGCTTCTTGG 300
consensus_1077#1      ---------------------------------------------ATGCTGGGCTTCCGG 15
                                                                    * *  *  *   **

consensus_1077#0      ACACCACAACTTGCTGCGTNGTCCAGGCTTGAGGTACACTTAAAAAGCTTCAATCTCACT 360
consensus_1077#1      ACTAGTTTTTTAGCACCATGGTGTCA-CAAAAGGTG-ATTCAGGGAGAGGCGACCGTGAG 73
                      **        * **  * * **     *   ****  * * *   **   * * *     

consensus_1077#0      ATTAGTAGATATCACAAACTTGCCTCCAATTTGCAGCTACGAAGGGTAGGAATNNTAATA 420
consensus_1077#1      ACT-GCAAATAT-ACAAATCTGGG---AGGCGGCGACCGTGATACCCGCAAGAGGTGATT 128
                      * * * * **** *****  **     *    **  *   **        *    * ** 

consensus_1077#0      GACCNCTATCCCNCTATCTAAACCT-TCNGGGANATGCATGCCAAAACACCTTCACTCTC 479
consensus_1077#1      CACCAGTATATATTTACAAATATATATTAGAAAAATGTATAGCTCTACCAATATATTACA 188
                       ***  ***     **   * *  * *  *  * *** **  *   **   *  * *   

consensus_1077#0      ATCGTGGGACAATTTGCCAAATGCTTACTCTGCATTCTCCCATATTTCCAAACCANAATT 539
consensus_1077#1      AGCC---GACAATTGCACATATACCTAATGCNNNNNATNNTGAGGC-------------- 231
                      * *    *******   ** ** * ** *        *                      

consensus_1077#0      NATGCNAATCTTGAA 554
consensus_1077#1      ---------------