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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 931 fasta sequence
[CCTNTTCGNTCCATTCCCTCTCCTC---CTCCNCTCCACCTCCACGNGCTCCTCCCCACCTCGTCTCGAACCCAGNTTGTTGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATG-AAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATAGCCTATGACTATGAGACTGGAAAGTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU078606 [CCTNTTCGNTCCATTCCCTCTCCTCCTNCTCCNCTCCACCTCCACGNGCTCCTCCCCACCTCGTCTCGAACCCAGNTTGTTGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATGAAAAAAGAGGNGATGCCTTCANCTCAGGAAGAGG ]
[+] EMBL CA767391 [ TCCCTCTCCTC CTCCCCTCCACCTCCACGCGCTCCTCCCCACCTCGTCTCGAACCCAGCTTGTCGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATG AAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGNTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGGTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGANGNTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCNTATATTGATGCTNCCTG ]
[+] EMBL AK058475 [ GAATG AAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCAGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCGCGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATA ]
[+] EMBL C99090 [ CATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTNNTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGA GTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTANATTGATGCTCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGG AACTTGGAGAGTGATAACCTTTTGTGCTTTANAATGCAG ]
[+] EMBL AU078605 [ TATAACAAGTTGNCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCANCCTTATATTGATGCNCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCCACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATAGCCTATGACTATGAGACTGGAAAGTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_10788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[CGAGACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGCCAAAAAAAAAAAA]
[-] EMBL CA763434 [CGAGACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGCCAAAAAAAAAAAA]
consensusID : consensus_10788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence
[CCCTCCGATACGCTTAAGGCCGCTTGAAGACACTCCGACCCAAATTGCAGCCTACTCAACAGCACAGCACGTTCACNTCGATTTCTTCATGCTTCTGGGTGACAACGAAGAGGGTCTTAATTCACCGNCTGAAGATGCACAGCCCGAACCNGGAATCCCATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCCAGTGTTCACCCCCAAACCCCTGTACGCGGTTTAGATACGAGAATGACTATAACCAGTTGTCTTTTTTGTTCGGGATTTTGCCC-GCTGCTATGCTCATG-CCCATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCCTTTTTGAATTTTGGGACCTGGTATCATCCTTATATTGATGCTCCCCTGTTTTGATGCCATGTAACCATCTGAGACGGGAATTGCCACCGGCGTTGTGTTGCCCTGAATATCTGAGTAAACCAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCNGNATAGCCTAAAAAAAAAAAAAAAAAAAANNNNNAAAAAA]
[+] EMBL BI805544 [CCCTCCGATACGCTTAAGGCCGCTTGAAGACACTCCGACCCAAATTGCAGCCTACTCAACAGCACAGCACGTTCACNTCGATTTCTTCATGCTTCTGGGTGACAACGAAGAGGGTCTTAATTCACCGNCTGAAGATGCACAGCCCGAACCNGGAATCCCATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCCAGTGTTCACCCCCAAACCCCTGTACGCGGTTTAGATACGAGAATGACTATAACCAGTTGTCTTTTTTGTTCGGGATTTTGCCC GCTGCTATGCTCATG CCCATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCCTTTTTGAATTTTGGGACCTGGTATCATCCTTATATTGATGCTCCCCTGTTTTGATGCCATGTAACCATCTGAGACGGGAATTGCCACCGGCGTTGTGTTGCCCTGAATATCTGAGTAAACCAAAGGAAA ]
[+] EMBL C99091 [ AGTTGTCTTTTTTGTTCGGGATTTTGCCCAGCTGCTATGCTCNTGNCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGNCATGGTATCATCCTTATATTGATGCT CCCTGTTTTGATG CATGTAACAATCTGAGAC GGAATTGCAACAGGCGTTGTNTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCNGNATAGCCTAAAAAAAAAAAAAAAAAAAANNNNNAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10788#0 CCTNTTCGNTCCATTCCCTCTCCTCCTCCNCTCCACCTCCACGNGCTCCTCCCCACCTCG 60
consensus_10788#1 ------------------------------------------------------------
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 TCTCGAACCCAGNTTGTTGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAA 120
consensus_10788#1 ----------------------------------------------------CGAGACAA 8
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 CAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGA 180
consensus_10788#1 CAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGA 68
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 ATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATG 240
consensus_10788#1 ATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATG 128
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 GTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTG 300
consensus_10788#1 GTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTG 188
consensus_10788#2 ------------------------------------------------------------
consensus_10788#0 ATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGC 360
consensus_10788#1 ATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGC 248
consensus_10788#2 -------------------------------------CCCTCCGATACGCTTAAGGCCGC 23
***** * ** * ******
consensus_10788#0 TTGAAG-CACTCCGACCAAAATTGCAGCCTACTCAACAGCA-AGCACGTTCACGTCGATT 418
consensus_10788#1 TTGAAG-CACTCCGACCAAAATTGCAGCCTACTCAACAGCA-AGCACGTTCACGTCGATT 306
consensus_10788#2 TTGAAGACACTCCGACCCAAATTGCAGCCTACTCAACAGCACAGCACGTTCACNTCGATT 83
****** ********** *********************** *********** ******
consensus_10788#0 TCTTCATGCTTCTGT-TGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCA-AGC 476
consensus_10788#1 TCTTCATGCTTCTGT-TGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCA-AGC 364
consensus_10788#2 TCTTCATGCTTCTGGGTGACAACGAAGAGGGTCTTAATTCACCGNCTGAAGATGCACAGC 143
************** **************************** *********** ***
consensus_10788#0 CAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAG 536
consensus_10788#1 CAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAG 424
consensus_10788#2 CCGAACCNGGAATCCCATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCCAG 203
* ***** ******* **************** ************************ **
consensus_10788#0 T-TTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCT 595
consensus_10788#1 T-TTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCT 483
consensus_10788#2 TGTTCACCCCCAAACCCCTGTACGCGGTTTAGATACGAGAATGACTATAACCAGTTGTCT 263
* ****** * ***** ********************************** ********
consensus_10788#0 TTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAG 655
consensus_10788#1 TTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAG 543
consensus_10788#2 TTTTTGTTCGGGATTTTGCCCGCTGCTATGCTCATGCCCATTTGTTACTTCGGTAATAAG 323
******************** ***************** *********************
consensus_10788#0 TACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATT 715
consensus_10788#1 TACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCATT 603
consensus_10788#2 TACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCCTT 383
*************************** ***************************** **
consensus_10788#0 TTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCCCTGTTTTGATGCATGTAA 775
consensus_10788#1 TTTGAATTTTGGGCCAAAAAAAAAAAA--------------------------------- 630
consensus_10788#2 TTTGAATTTTGGGACCTGGTATCATCCTTATATTGATGCTCCCCTGTTTTGATGCCATGT 443
************* * * *
consensus_10788#0 CAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAG 835
consensus_10788#1 ------------------------------------------------------------
consensus_10788#2 AACCATCTGAGACGGGAATTGCCACCGGCGTTGTGTTGCCCTGAATATCTGAGTAAACCA 503
consensus_10788#0 GAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATAGCCTATG 895
consensus_10788#1 ------------------------------------------------------------
consensus_10788#2 AAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCNGNATAGCCT 563
consensus_10788#0 ACTATGAGACTGGAAAGTTAAAAAAAAAAAAAAAAA 931
consensus_10788#1 ------------------------------------
consensus_10788#2 AAAAAAAAAAAAAAAAAAAANNNNNAAAAAA----- 594
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||