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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2428 fasta sequence
[CACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGGTGATCGGAGCCCCACCCTTCGTTTTCTCCGCGCAATTTTAGCACCGACGCGGGTGGTGGTGGTGGTGGTGGTGGTGGGCATTGGCATTTCGTCCCCTTCCCCACGATAGAGACGCGGAGCGTGTGCCCCCCCTCTCGATCTTGCCGCCGCTCGTAATCCCCGCCTGATGCCGGAGAACCTGCATTTTTTTTTGAGCCATTCCAGGCTTACGTTCTAATGCGACGCTGCTAGCGATAGAAAACCCAGTGGGGGGTCTGTGAGAATCATCGCTTGATCTCCGATCTATCCTGTTAACCATTCCTGTGAGGTTAGGAGGTTTCTGGTTTAGGGGCCTGAGTGAGGAGGAGGGTACTCAAACGGCTGGACCTGCAATCGATCTGCTAACTTGGCTAACTTTGATAAAAGTGTCCCTTCCAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGGTGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGAGGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC-TTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT-CAGATACCTCAATGG-CCTATGG-CGATGGTTTTAGAGCT-GGCAACC-GAGCTGTTCTT-CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA-TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA-TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTATTTTTTATGTGAAAAAAA--AAAAAAAAATT]
[+] EMBL AK105719 [CACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGGTGATCGGAGCCCCACCCTTCGTTTTCTCCGCGCAATTTTAGCACCGACGCGGGTGGTGGTGGTGGTGGTGGTGGTGGGCATTGGCATTTCGTCCCCTTCCCCACGATAGAGACGCGGAGCGTGTGCCCCCCCTCTCGATCTTGCCGCCGCTCGTAATCCCCGCCTGATGCCGGAGAACCTGCATTTTTTTTTGAGCCATTCCAGGCTTACGTTCTAATGCGACGCTGCTAGCGATAGAAAACCCAGTGGGGGGTCTGTGAGAATCATCGCTTGATCTCCGATCTATCCTGTTAACCATTCCTGTGAGGTTAGGAGGTTTCTGGTTTAGGGGCCTGAGTGAGGAGGAGGGTACTCAAACGGCTGGACCTGCAATCGATCTGCTAACTTGGCTAACTTTGATAAAAGTGTCCCTTCCAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGGTGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGAGGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC TTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTCTT CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTCTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCGTTCAGAAATTCTAATGGAAACAGCGGTATTT ]
[-] EMBL CB677885 [ TGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC TTCATCCTCATCAGCATCCACATCATGGAAAAAGGGGGGAAGATTTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTTTT CAGTATGGTTTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTTTAATGGAAACAGCGGTATTTTTTATGTGAAAGAAATTAATAAGAAATT]
[+] EMBL AU030799 [ TGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTATTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC TTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTCTT CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTATTTTTTATGTGACAAAAA AAAAAAAAA ]
[+] EMBL BM038044 [ AGAGATCATCGCAGGATCA GCAGTAATGGTGCTTCAACGTCGTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTCTT CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCACTTTTGAAATGTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCACTTAAGCGTCCATTTACAGGAAAAGAAAGCCATTTTGAGATGTGCCATTGTAC AACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACC ATCACACATGTATGGCATTCAGAAATTCTAATGGAAACANCAGTATTTTTTA AAAAAAA AA ]
[+] EMBL C99110 [ AGTCCAGNTCCCTCCATGGCCCTTTGGCCGNGGGTTTTAGAGCTGGGCAACCGGNGCTGTTCTTCCAGTATGGTCTAAAGCGC CCCTTGAGCATACCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTATTTTTTA AAAAAAA AAAAAAA ]
consensusID : consensus_10798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2084 fasta sequence
[CCTGCCTCCTCCTGCCGTGCCACAAAAAGCAAGGCAAAGCAGCAGCGAGGAGGCGAGACAGATTCCCAAATCCCGCACAACCCCACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGATAAAAGTGTCCCTTCTAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGATGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGATGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCTGGCAACC-GAGCTGTTCTT-CAGTAT-GGTCTAAAGCGCA-CCCTTGAGCATATCCGGTTAACAGGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTAT]
[+] EMBL AK069056 [CCTGCCTCCTCCTGCCGTGCCACAAAAAGCAAGGCAAAGCAGCAGCGAGGAGGCGAGACAGATTCCCAAATCCCGCACAACCCCACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGATAAAAGTGTCCCTTCTAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGATGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGATGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCTGGCAACC GAGCTGTTCTT CAGTAT GGTCTAAAGCGCA CCCTTGAGCATATCCGGTTAACAGGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTAT]
[+] EMBL C99109 [ AGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAA CTTGGTGA TTTTTCAAGCACC AATTGAGTCAGATACCTCCATGGCCTATGGCGATGG TTTAGAGCTGGCAACCGGAGCTG TCTTCCAGTATGGGTCTAAAGCGCANCCCTn ]
consensusID : consensus_10798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[AGNGAACGCGTGGGTGGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGANAGTGGACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCCTGGAAGGAGAGAAGACTGGTCA]
[+] EMBL AU095148 [AGNGAACGCGTGGGTGGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGANAGTGGACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCCTGGAAGGAGAGAAGACTGGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10798#1 ------------------------------------------------------------
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 CACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGC 60
consensus_10798#1 ------------------------------------------------------------
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGT 120
consensus_10798#1 ------------------------------------------------------------
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 CGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTT 180
consensus_10798#1 ------------------------------------------------------------
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGG 240
consensus_10798#1 -------------------------------------------------------CCTGC 5
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGGTGATCGGAGCCCCACCCTTC 300
consensus_10798#1 CTCCTCCTGCCGTGCCACAAAAAGCAAGGCAAA--GCAGCAGCGA-GGAGGCGAGACAGA 62
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GTTTTCTCCGCGCAATTTTAGCACCGACGCGGGTGGTGGTGGTGGTGGTGGTGGTGGGCA 360
consensus_10798#1 TTCCCAAATCCCGCACAACCCCACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCG 122
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TTGGCATTTCGTCCCCTTCCCCACGATAGAGACGCGGAGCGTGTGCCCCCCCTCTCGATC 420
consensus_10798#1 CCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGAT 182
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TTGCCGCCGCTCGTAATCCCCGCCTGATGCCGGAGAACCTGCATTTTTTTTTGAGCCATT 480
consensus_10798#1 CGAG-CGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGAC---GTCGTCGGTCGTAGC 238
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 CCAGGCTTACGTTCTAATGCGACGCTGCTAGCGATAGAAAACCCAGTGGGGGGTCTGTGA 540
consensus_10798#1 TTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCT------GGTGGTGGT 292
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GAATCATCGCTTGATCTCCGATCTATCCTGTTAACCATTCCTGTGAGGTTAGGAGGTTTC 600
consensus_10798#1 CGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCG------CGG 346
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TGGTTTAGGGGCCTGAGTGAGGAGGAGGGTACTCAAACGGCTGGACCTGCAATCGATCTG 660
consensus_10798#1 GTGACGCGGTGA--TCAGATAAAAGTGTCCCTTCTAACATTGCCATTTGGAGCTCTATGG 404
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 CTAACTTGGCTAACTTTGATAAAAGTGTCCCTTCCAACATTGCCATTTGGAGCTCTATGG 720
consensus_10798#1 GTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACA 464
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACA 780
consensus_10798#1 GCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGATG 524
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGGTG 840
consensus_10798#1 TCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGG 584
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGG 900
consensus_10798#1 AGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAAC 644
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 AGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAAC 960
consensus_10798#1 TTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATG 704
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATG 1020
consensus_10798#1 GCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCA 764
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCA 1080
consensus_10798#1 GGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAG 824
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAG 1140
consensus_10798#1 CTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATG-ACTAT 883
consensus_10798#2 --------------------------------------AGNGAACGCGTGGGTGGACTAT 22
consensus_10798#0 CTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATG-ACTAT 1199
* *** * ** *****
consensus_10798#1 GAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCAC 943
consensus_10798#2 GAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCAC 82
consensus_10798#0 GAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCAC 1259
************************************************************
consensus_10798#1 CCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATAT 1003
consensus_10798#2 CCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATAT 142
consensus_10798#0 CCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATAT 1319
************************************************************
consensus_10798#1 AGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCA 1063
consensus_10798#2 AGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCA 202
consensus_10798#0 AGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCA 1379
************************************************************
consensus_10798#1 AGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGAT 1123
consensus_10798#2 AGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGAT 262
consensus_10798#0 AGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGAT 1439
************************************************************
consensus_10798#1 GGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAA 1183
consensus_10798#2 GGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAA 322
consensus_10798#0 GGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAA 1499
************************************************************
consensus_10798#1 CCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAA 1243
consensus_10798#2 CCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGANAGTGGA-CAACAA 381
consensus_10798#0 CCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAA 1559
********************************************** ****** ******
consensus_10798#1 GTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACT 1303
consensus_10798#2 GTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCCTGGAAGGAGAGAAGACT 441
consensus_10798#0 GTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACT 1619
****************************************** *****************
consensus_10798#1 GGTCACCACCATCTTCCAGAAACAAGATGTTTATGCTTATCAGAAGAGCAAACTGTCAGC 1363
consensus_10798#2 GGTCA------------------------------------------------------- 446
consensus_10798#0 GGTCACCACCATCTTCCAGAAACAAGAGGTTTATGCTTATCAGAAGAGCAAACTGTCAGC 1679
*****
consensus_10798#1 ACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCA 1423
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 ACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCA 1739
consensus_10798#1 TATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGA 1483
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGA 1799
consensus_10798#1 TTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGA 1543
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGA 1859
consensus_10798#1 TATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGG 1603
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGG 1919
consensus_10798#1 ATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCA 1663
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 ATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCA 1979
consensus_10798#1 TCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGAT 1723
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGAT 2039
consensus_10798#1 TTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCT 1783
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCT 2099
consensus_10798#1 GGCAACCGAGCTGTTCTTCAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACA 1843
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GGCAACCGAGCTGTTCTTCAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACA 2159
consensus_10798#1 GGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCG 1903
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 GGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCG 2219
consensus_10798#1 ATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTAC 1963
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 ATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTAC 2279
consensus_10798#1 AAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATA 2023
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 AAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATA 2339
consensus_10798#1 TGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTA 2083
consensus_10798#2 ------------------------------------------------------------
consensus_10798#0 TGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTA 2399
consensus_10798#1 T---------------------------- 2084
consensus_10798#2 -----------------------------
consensus_10798#0 TTTTTTATGTGAAAAAAAAAAAAAAAATT 2428
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||