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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 969 fasta sequence
[CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCGCGCCGGAGGCG-CAGCAGCAGCTCTCCGGCGGCGGGGACACGCCCGCGGCGGCGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCGCCGCCACCGCCGCGCTCTGCGTCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCGCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCTCGCTGTTCGTGGGGGTGGTCGAG-ACAGAGTGGGGATTCATCATGAAATTCTGCAAGATTTTGGAGTACTGGCCTGCAAGGGGAATGTTACAGATCTTTGTTGCTGTCATGACAAAGGCATACCCAATGTTGAAAGGGGTGATTTGATTTTGCTTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTGTGCTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGC-AACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATC-TTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA]
[+] EMBL AU222756 [CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCGCGCCGGAGGCG CAGCAGCAGCTCTCCGGCGGCGGGGACACGCCCGCGGCGGCGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCGCCGCCACCGCCGCGCTCTGCGTCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCGCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCTCGCTGTTCGTGGGGGTGGTCGAG ACAGAGTGGGGATTCATCATGAAATTCTGCAAGATTTTGGAGTACTGGCCTGCAAGGGGAATGTTACAGATCTTTGTTGCTGTCATGACAAAGGCAT ]
[+] EMBL OSS0744A [CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCG GCCGGAGGAGNCAG GCAGCTCTCCGGCGGCGGGGACACG CCGCGGCGGCGG GCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTC ]
[+] EMBL BM420964 [ TGTTCATCTCGCTGTTC T GGGGTGTTCGAGTACAGAGTGGGGATTCATCATGAAATTCTGCAAGATTTTGGAGTACT GCCTGCAAGGGGAATGTTACAGATCTTTGTTGCTGTCATGACAAAGGCATACCCAATGTTGAAAGGGGTGATTTGATTTTGCTTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTGT CTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGCAAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGAC GATTCCAACCAGGACGATCTGACA TTACTTGTTCA TGTAGATAAAATTTG TTGTTTTTGTTCCT CCGCTTGCCTATATCTTTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTNGTTGATGTAaaaa ]
[+] EMBL AU222757 [ TCTCGGGTGTGCTGTGCATTGGTGTGTTGAAGCGTTNTAGGCAGCAGAAAGC AACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATC TTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA]
[+] EMBL AU222768 [ CTCGGGTGTGCTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGC AACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATC TTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA]
[+] EMBL AU100787 [ tnCTTGCTCAGTGTAGANNAAATTTGTTTGTTTTTGTTCCTGCCNCTTGCCTATATC TTGTTCGTGGTCACCATCATTTGAAGTAAANCCAAAACTACTCTTGTTGATGTATATCGNGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA]
consensusID : consensus_10916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[TCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCGCGTCGNNTCGGGAGGCNGCGGCNNCCGGANGNCAGCAGCAGCTCTCCGGCGGCGGGGACACGCGNCTGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCNCCGCCACCGCCGCGCTCTGNTNCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCNCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCT]
[+] EMBL C27019 [TCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCGCGTCGNNTCGGGAGGCNGCGGCNNCCGGANGNCAGCAGCAGCTCTCCGGCGGCGGGGACACGCGNCTGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCNCCGCCACCGCCGCGCTCTGNTNCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCNCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCT]
consensusID : consensus_10916#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence
[GATTCGCTNGAGCAGAAAGCAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATCTTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGA]
[+] EMBL AA753172 [GATTCGCTNGAGCAGAAAGCAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATCTTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10916#0 CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGG 60
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 CCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCGCGCCGGAGGCGCAGCAGCAGC 120
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 TCTCCGGCGGCGGGGACACGCCCGCGGCGGCGGCGCCCCACGCGGTCCAGGTCCGACCCG 180
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 CTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCGCCGCCACCGCCGCGCTCTGCGTC 240
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 GCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCGCACCGGCCTCGACATATTCGGGGGC 300
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 ATATTCCGGTGCTACGCGGTGGTCATCTCGCTGTTCGTGGGGGTGGTCGAGACAGAGTGG 360
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 GGATTCATCATGAAATTCTGCAAGATTTTGGAGTACTGGCCTGCAAGGGGAATGTTACAG 420
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 ATCTTTGTTGCTGTCATGACAAAGGCATACCCAATGTTGAAAGGGGTGATTTGATTTTGC 480
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 TTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTG 540
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 TGCTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGCAACATCACGAGAACAAG 600
consensus_10916#2 -----------------------GATTCGCTNGAGCAGAAAGCAACATCACGAGAACAAG 37
consensus_10916#1 --------------------------TCGGAAATCTAACCCTAACCCTAACCCTAAAGGC 34
** * * * * ** **
consensus_10916#0 CAGTCAAGGATCTGGAGGAGC-TGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTT 659
consensus_10916#2 CAGTCAAGGATCTGGAGGAGC-TGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTT 96
consensus_10916#1 TAGCCATGGCCAAGGGGGCGCGTCGNNTCGGGAGGCNGCGGCNNCCGGANGNCAGCAGCA 94
** ** ** ** ** ** * * * * * * *
consensus_10916#0 GCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTT 719
consensus_10916#2 GCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTT 156
consensus_10916#1 GCTCTCCGG--CGGCGGGGACACGCGNCTGGCGCCCCACGCGGTCCAGGTCCGACCCGCT 152
**** ** * ** * ** * * ** ** ** ** * *
consensus_10916#0 CAGTGTAG-ATAAAATTTGTTTGTTTTTGTTCCTGCCGCT--TGCCTATATCTTGTTCGT 776
consensus_10916#2 CAGTGTAG-ATAAAATTTGTTTGTTTTTGTTCCTGCCGCT--TGCCTATATCTTGTTCGT 213
consensus_10916#1 CCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCNCCGCCACCGCCGCGCTCTGNTNCGC 212
* * * * * *** * * ** * **** *** *** * **
consensus_10916#0 GGTCACCATCATTT--GAAGTA-AATCCAAAACTACTCTTGTTGATGTATATCGAGAACT 833
consensus_10916#2 GGTCACCATCATTT--GAAGTA-AATCCAAAACTACTCTTGTTGATGTATATCGAGAACT 270
consensus_10916#1 CGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCNCACCGGCCTCGACATAT-TCGGGGGCA 271
**** * ** * * * ** * *** ** * ** *** *** * *
consensus_10916#0 TGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTT 893
consensus_10916#2 TGTTTTTTTTTTCCAACTCTGA-------------------------------------- 292
consensus_10916#1 TATTCCGGTGCTACG-CGGTGGTCATCT-------------------------------- 298
* ** * * * * **
consensus_10916#0 CCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCC 953
consensus_10916#2 ------------------------------------------------------------
consensus_10916#1 ------------------------------------------------------------
consensus_10916#0 AATCAACTGACAAAAA 969
consensus_10916#2 ----------------
consensus_10916#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||