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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2098 fasta sequence
[CGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTCTAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATGTTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCACCAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTGGAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGTGGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCTCTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTGTTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAGGTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTGATATTTCATTCAAAGCTGAATGTCAAATTGCACACTTCTAAGATTTAAGGCGTGTTTACGTTGCTTCACTCTCTTTACCATTTACGCATTGGCATCAGCAGCGAACAAGAGCATCACCAATGGGTTCTGCCAAGGGACCAAGCTGGATTGATGGGTTCGATTATTTCTGAAATTTTCTCTACTTCACTGATTTTCAGGAATTCCGGACCACATTTTGGTCAAAGTTTGAAAAAATCGATCAAAATCTGCCATTGGACCACCGATTTTTCATGATTTCTTTTTCTTTTTTTAAAAAAAAGAAAAACAGCGAGTGATCCCTAGAGTGGTTTCCTTAGTCTGCCATTTCCTGCGCATGCATCGATTGATTGATTTATGGGTGGGTTCCTCATTTTGAATGAATATGAACAGGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGT]
[+] EMBL AK071358 [CGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTCTAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATGTTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCACCAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTGGAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGTGGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCTCTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTGTTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAGGTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTGATATTTCATTCAAAGCTGAATGTCAAATTGCACACTTCTAAGATTTAAGGCGTGTTTACGTTGCTTCACTCTCTTTACCATTTACGCATTGGCATCAGCAGCGAACAAGAGCATCACCAATGGGTTCTGCCAAGGGACCAAGCTGGATTGATGGGTTCGATTATTTCTGAAATTTTCTCTACTTCACTGATTTTCAGGAATTCCGGACCACATTTTGGTCAAAGTTTGAAAAAATCGATCAAAATCTGCCATTGGACCACCGATTTTTCATGATTTCTTTTTCTTTTTTTAAAAAAAAGAAAAACAGCGAGTGATCCCTAGAGTGGTTTCCTTAGTCTGCCATTTCCTGCGCATGCATCGATTGATTGATTTATGGGTGGGTTCCTCATTTTGAATGAATATGAACAGGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGT]
[+] EMBL CF303451 [ TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTCTAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATGTTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCACCAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTGGAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGTGGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCTCTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTGTTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAGGTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTGATATTTCATTCAAAGCTGAATGTCAAAT ]
consensusID : consensus_10921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1209 fasta sequence
[TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGGTCGATATATCAAATCTGACCGCTCTGCATTTATTCATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATTCTCCGGAGCAAATAAAATGATAATGCATAATAGTAGTAAAAAAAGAA]
[+] EMBL CB658148 [TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGGTCGATATATCAAATCTGACCGCTCTGCATTTATTCATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAG ]
[-] EMBL CB658149 [ ATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATTCTCCGGAGCAAATAAAATGATAATGCATAATAGTAGTAAAAAAAGAA]
consensusID : consensus_10921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1176 fasta sequence
[ATCCTTCCCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGT-CAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGT]
[+] EMBL CB654257 [ATCCTTCCCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCCCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCC TGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCCAAGCAGGATCCTTGGTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACCTCCATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAA ]
[+] EMBL AK060329 [ gCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGT CAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGT]
[+] EMBL AK104164 [ TCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGT CAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAAT ]
consensusID : consensus_10921#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[TCCCGTCTTGTATGGACTTCCCCCACTCATGATCAAACCTGTCAGCTTACCATTTTTTTTGTGACAGATATAATTTGAAGACCCCTGTTAGCTGACCATTTTTTTTGTGACAGATATTATTTGAAGGCTTTTTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTTTTTTTCCCTCATTTAAGGGAGGGAATCCTTTGAGACAGGCCTTCAACGGTGGAGTAAAATTGATTGGGGCAACCAGCCATTTTGTTTCCCCAGAACTTGATGTTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCCCAGAGACACGCTACAGAGCTTTGTGGTGAAATTTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTCCCATATGAATTGAAGAAGACAGTAGTGTTTTGATATTTTTTGAAGGAAGGGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTCCAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCAT]
[-] EMBL CB630637 [TCCCGTCTTGTATGGACTTCCCCCACTCATGATCAAACCTGTCAGCTTACCATTTTTTTTGTGACAGATATAATTTGAAGACCCCTGTTAGCTGACCATTTTTTTTGTGACAGATATTATTTGAAGGCTTTTTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTTTTTTTCCCTCATTTAAGGGAGGGAATCCTTTGAGACAGGCCTTCAACGGTGGAGTAAAATTGATTGGGGCAACCAGCCATTTTGTTTCCCCAGAACTTGATGTTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCCCAGAGACACGCTACAGAGCTTTGTGGTGAAATTTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTCCCATATGAATTGAAGAAGACAGTAGTGTTTTGATATTTTTTGAAGGAAGGGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTCCAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 CGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGC 60
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 CGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGC 120
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 CCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTC 180
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 TAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATG 240
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 TTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCAC 300
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 CAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTG 360
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 GAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGT 420
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 GGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCT 480
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 CTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTG 540
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 TTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAG 600
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 GTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTG 660
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 ATATTTCATTCAAAGCTGAATGTCAAATTGCACACTTCTAAGATTTAAGGCGTGTTTACG 720
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 TTGCTTCACTCTCTTTACCATTTACGCATTGGCATCAGCAGCGAACAAGAGCATCACCAA 780
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 TGGGTTCTGCCAAGGGACCAAGCTGGATTGATGGGTTCGATTATTTCTGAAATTTTCTCT 840
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 ACTTCACTGATTTTCAGGAATTCCGGACCACATTTTGGTCAAAGTTTGAAAAAATCGATC 900
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------------------------------------------
consensus_10921#2 ----------ATCCTTCCCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGA 50
consensus_10921#0 AAAATCTGCCATTGGACCACCGATTTTTCATGATTTCTTTTTCTTTTTTTAAAAAAAAGA 960
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ------------------------TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCC 36
consensus_10921#2 GAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCC 110
consensus_10921#0 AAAACAGCGAGTGATCCCTAGAGTGGTTTCCTTAGTCTGCCATTTCCTGCGCATGCATCG 1020
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 GTCGGCAACCTCCTCGGCATCCACCTC--TTCCAATGC-------CCTGACACGGTGGGC 87
consensus_10921#2 GTCGGCAACCTCCTCGGCATCCACCTC--TTCCAATGC-------CCTGACACGGTGGGC 161
consensus_10921#0 ATTGATTGATTTATGGGTGGGTTCCTCATTTTGAATGAATATGAACAGGACACGGTGGGC 1080
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGAT 147
consensus_10921#2 ATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGAT 221
consensus_10921#0 ATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGAT 1140
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 GTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCC 207
consensus_10921#2 GTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCC 281
consensus_10921#0 GTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCC 1200
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 ATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGC 267
consensus_10921#2 ATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGC 341
consensus_10921#0 ATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGC 1260
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 GCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTC 327
consensus_10921#2 GCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTC 401
consensus_10921#0 GCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTC 1320
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 GCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTT 387
consensus_10921#2 GCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTT 461
consensus_10921#0 GCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTT 1380
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 CCGGTTGACATCAATTGTGTCATAAGGTCGATATATCAAATCTGACCGCTCTGCATTTAT 447
consensus_10921#2 CCGGTTGACATCAATTGTGTCATAAG---------------------------------- 487
consensus_10921#0 CCGGTTGACATCAATTGTGTCATAAG---------------------------------- 1406
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 TCATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAG 507
consensus_10921#2 ------------------------------------------------------------
consensus_10921#0 ------------------------------------------------------------
consensus_10921#3 ------------------------------------------------------------
consensus_10921#1 CAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCC 567
consensus_10921#2 CAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCC 547
consensus_10921#0 CAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCC 1466
consensus_10921#3 ---------------------------------------TCCCGTCTTGTATGGACTTCC 21
* * **** * **
consensus_10921#1 CTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGT 627
consensus_10921#2 CTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGT 607
consensus_10921#0 CTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGT 1526
consensus_10921#3 CC-----CACTCATGATCAAACCTGTCAGCTTA-------CCATTTTTTTTGTGACAGAT 69
* ** * *** ** * * * * * **** * * *
consensus_10921#1 TCAAGGTACCGATTTTGTGGTACTGGCAAGATATAT----GCAGATATTATCTGAAGGCT 683
consensus_10921#2 TCAAGGTACCGATTTTGTGGTACTGGCAAGATATAT----GCAGATATTATCTGAAGGCT 663
consensus_10921#0 TCAAGGTACCGATTTTGTGGTACTGGCAAGATATAT----GCAGATATTATCTGAAGGCT 1582
consensus_10921#3 ATAATTTGAAGACCCCTGTTAGCTGACCATTTTTTTTGTGACAGATATTATTTGAAGGCT 129
** * ** *** * * * * * ********** ********
consensus_10921#1 TTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTA 743
consensus_10921#2 TTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTA 723
consensus_10921#0 TTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTA 1642
consensus_10921#3 TTTTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTTTTTTTCCCTCATTTA 189
** ***************************************** ** ************
consensus_10921#1 AGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCA 803
consensus_10921#2 AGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCA 783
consensus_10921#0 AGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCA 1702
consensus_10921#3 AGGGAGGGAATCCTTTGAGACAGGCCTTCAACGGTGGAGTAAAATTGATTGGGGCAACCA 249
*************** ***************** *************** ** *******
consensus_10921#1 GCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGG 863
consensus_10921#2 GCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGG 843
consensus_10921#0 GCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGG 1762
consensus_10921#3 GCCATTTTGTTTCCCCAGAACTTGATGTTGGCCCAATCATTGAGCAGATGGTTGAACGGG 309
*********** *************** ********************************
consensus_10921#1 TGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGT 923
consensus_10921#2 TGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGT 903
consensus_10921#0 TGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGT 1822
consensus_10921#3 TGTCCCCCAGAGACACGCTACAGAGCTTTGTGGTGAAATTTGAGAACCTAGAGAAGCAGT 369
****** ******************************** ********************
consensus_10921#1 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGA 983
consensus_10921#2 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGA 963
consensus_10921#0 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGA 1882
consensus_10921#3 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTCCCATATGAATTGAAGA 429
******************************************* ****************
consensus_10921#1 AGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGT 1043
consensus_10921#2 AGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGT 1023
consensus_10921#0 AGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGT 1942
consensus_10921#3 AGACAGTAGTGTTTTGATATTTTTTGAAGGAAGGGATTTTGTTTGTTTGTTTTTATTTGT 489
************* ****** ************ **************************
consensus_10921#1 TGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 1103
consensus_10921#2 TGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 1083
consensus_10921#0 TGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 2002
consensus_10921#3 TGATAAGAGGAAATTACTCCAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 549
****************** *****************************************
consensus_10921#1 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATTC 1163
consensus_10921#2 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATAC 1143
consensus_10921#0 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATAC 2062
consensus_10921#3 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATAC 609
********************************************************** *
consensus_10921#1 TCCGGAGCAAATAAAATGATAATGCATAATAGTAGTAAAAAAAGAA 1209
consensus_10921#2 TCCAAAGCAAATAAAATGATAATGCATAATAGT------------- 1176
consensus_10921#0 TCCAAAGCAAATAAAATGATAATGCATAATAGTAGT---------- 2098
consensus_10921#3 TCCAAAGCAAATAAAATGATAATGCAT------------------- 636
*** **********************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||