cluster # 10930

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Oryza sativa
cluster # 10930 cluster # 10930 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10930#0 length = 617 sequences # 6

consensus_10930#1 length = 494 sequences # 1
consensus_10930#2 length = 249 sequences # 1

consensusID : consensus_10930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 617
fasta sequence

                              [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC-TCTCCCACGGATTTGCCTGGCCGCCATGG-GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC-TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG-GCACTGAACAG-TGTGGACTGACCCAT-CATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA-CAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGTGGTGCTGTTGCTGCTGCCCTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTCGAGGCCCAGGCAGCGGAGAAAGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTTCTGAAGCAACGCCGTGG]

[+] EMBL CB644651             [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA CAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGTGGTGCTGTTGCTGCTGCCCTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTCGAGGCCCAGGCAGCGGAGAAAGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTTCTGAAGCAACGCCGTGG]
[+] EMBL CB685409             [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA CAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGT                                                                                                                                       ]
[+] EMBL CB653342             [TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCT                                                                                                                                                                                                                                                                                             ]
[-] EMBL BI812480             [ ACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGGTGCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGG CAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTGTGCACTGAACAGTTGTGGACTGACCCATACATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGGAGGA CAGCATTGGGGATGGCTCCGG TGTAACCG                                                                                                                                                                                                           ]
[-] EMBL BI812183             [ ACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCCGTCTCCCACGGATTTGCCTGGCCGCCATGG GCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCC TGCTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTG GCACTGAACAG TGTGGACTGACCCAT CATGAGCTCCGGCAAGCTCACCGGACCG CTGTCGCGTCGTATGGTAACCCGAGG CGAGCCCGGAGGACCAG ATTGG                                                                                                                                                                                                                                ]
[-] EMBL AU166401             [ ACTTNGTGCTGCATGTGTCNAATTCACAGGGGTTTGCTACTTGGNGCTAATTGCTACCAGTTGCTAGCTAGCTAGNGCTATTACAGGATTGGTGAGCTACTCGGGTTCC TCTCCCACGGATTTGCCTGGCCGCCATGG GCGGNGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGCCAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCCTTGNTTGTCGACGCGCCTGTCGGGCTCACTCCAAGCCCCAAGAAATNTA                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_10930#0
TACTTCGTGCTGCATGTGTCGAATTCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCA
GTTGCTAGCTAGCTAGTGCTATTACAGGATTGGTGAGCTACTCGGGTTCCTCTCCCACGG
ATTTGCCTGGCCGCCATGGGCGGCGCCGAAGGTCTCCGCGGCGACGGTGGCACTCCCGGC
CAAGCTGACAGCGCCGCCGATGGGTTGGATGAATGTCGGGAAGCCCCTGCTTGTCGACGC
GCCTGTCGGGCTCACTCCAAGCCCCAAGAAATCTAGTGTTGCCGGCTTGGCACTGAACAG
TGTGGACTGACCCATCATGAGCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGG
TAACCCGAGGCCGAGCCCGGAGGACAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGG
CCATTCGGGCAGCGAACTCGCCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTG
GTGGTGCTGTTGCTGCTGCCCTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTC
GAGGCCCAGGCAGCGGAGAAAGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTT
CTGAAGCAACGCCGTGG

consensusID : consensus_10930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTCAAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTTGGTGCTAATTGCTACCAGTTGTAGCTAGCTAGTGCTATTACAGGATTGGTTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTCCGCTGTGCTGACGTGTGGACTCCCTGGCAAGCTGACAGGTGCCTGCGATGGGTTTGGATGAATTGTCGGGAAGCCCCTGCTTGTCGAGCGCCTGTCGGGCTACACTCCAAGCCCAAGAAATCTAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGATGCTCCTGGAAGCTCACCTGAG]

[-] EMBL BM420482             [TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTCAAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTTGGTGCTAATTGCTACCAGTTGTAGCTAGCTAGTGCTATTACAGGATTGGTTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTCCGCTGTGCTGACGTGTGGACTCCCTGGCAAGCTGACAGGTGCCTGCGATGGGTTTGGATGAATTGTCGGGAAGCCCCTGCTTGTCGAGCGCCTGTCGGGCTACACTCCAAGCCCAAGAAATCTAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGATGCTCCTGGAAGCTCACCTGAG]




>consensus_10930#1
TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTC
AAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCC
ACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTT
GGTGCTAATTGCTACCAGTTGTAGCTAGCTAGTGCTATTACAGGATTGGTTGAGCTACTC
GGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTCCG
CTGTGCTGACGTGTGGACTCCCTGGCAAGCTGACAGGTGCCTGCGATGGGTTTGGATGAA
TTGTCGGGAAGCCCCTGCTTGTCGAGCGCCTGTCGGGCTACACTCCAAGCCCAAGAAATC
TAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGATGCTCCTG
GAAGCTCACCTGAG

consensusID : consensus_10930#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [TTGCTAACTGAACCTGGTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTACCACTAGTGCTATTCCCAGGCATTGGTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCGGCGCCGCAAGGTCTCCGCTGTGCGACTGGTGGCACTCCCTGTGCAAGCATGCACAGCGCCGCCGC]

[-] EMBL BQ907878             [TTGCTAACTGAACCTGGTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTACCACTAGTGCTATTCCCAGGCATTGGTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCGGCGCCGCAAGGTCTCCGCTGTGCGACTGGTGGCACTCCCTGTGCAAGCATGCACAGCGCCGCCGC]




>consensus_10930#2
TTGCTAACTGAACCTGGTGTTCCACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCG
AATTCCACAGTGGTTTGCTACTTGGTGCTAATTGCTACCAGTTGCTACCACTAGTGCTAT
TCCCAGGCATTGGTGAGCTACTCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGG
TGCGGCGCCGCAAGGTCTCCGCTGTGCGACTGGTGGCACTCCCTGTGCAAGCATGCACAG
CGCCGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10930#1      TTTTTTTTTTCACTTGTAANTTCGGACTAAGCTAAATAAACAAAAGAACTGAGGTTGGTC 60
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      ------------------------------------------------------------
                                                                                   

consensus_10930#1      AAATGGAAAAAACAAAAGTTGGAAGATACTTGTAAATTGTAACTTGAACCTGGCTGTTCC 120
consensus_10930#2      ------------------------------------TTGCTAACTGAACCTGG-TGTTCC 23
consensus_10930#0      ------------------------------------------------------------
                                                                                   

consensus_10930#1      ACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCACAGNTGGTTTGGTACTT 180
consensus_10930#2      ACTATTTTCACCGTCTTACTTCGTGCTGCATGTGTCGAATTCCACAGTGGTTTGCTACTT 83
consensus_10930#0      ----------------TACTTCGTGCTGCATGTGTCGAATTCACA-GTGGTTTGCTACTT 43
                                       **************************     ******* *****

consensus_10930#1      GGTGCTAATTGCTACCAGTTG-TAGCTAGCTAGTGCTATTAC-AGGATTGGTTGAGCTAC 238
consensus_10930#2      GGTGCTAATTGCTACCAGTTG-CTACCA-CTAGTGCTATTCCCAGGCATTGGTGAGCTAC 141
consensus_10930#0      GGTGCTAATTGCTACCAGTTGCTAGCTAGCTAGTGCTATTAC-AGGATTGG-TGAGCTAC 101
                       *********************    * * *********** * ***  * * ********

consensus_10930#1      TCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCTGTGTGCCGAAGTGTCTC 298
consensus_10930#2      TCGGGTTCCTCTCCCACGGATTTGCCTGGCCTGCCATGGTGCGGCG--CCGCAAGGTCTC 199
consensus_10930#0      TCGGGTTCCTCTCCCACGGATTTGCCTGGCC-GCCATGG-GCGGCG--CCGAAG-GTCTC 156
                       ******************************* ******* ** * *  *** *  *****

consensus_10930#1      CGCTGTGCTGACGTGTGG-ACTCCCTG-GCAAGCTGACA-GGTGCCTGCGATGGGTTTGG 355
consensus_10930#2      CGCTGTGC-GACTGGTGGCACTCCCTGTGCAAGCATGCACAGCGCCGCCGC--------- 249
consensus_10930#0      CGCGGCG---ACG-GTGGCACTCCCGG-CCAAGCTGACA--GCGCCGCCGATGGGTT-GG 208
                       *** * *   **  **** ****** *  *****   **  * ***  **          

consensus_10930#1      ATGAATTGTCGGGAAGCCCCTGCTTGTCGA-GCGCCTGTCGGGCTACACTCCAAGCCC-A 413
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      ATGAAT-GTCGGGAAGCCCCTGCTTGTCGACGCGCCTGTCGGGCT-CACTCCAAGCCCCA 266
                                                                                   

consensus_10930#1      AGAAATCTAGTGTTTGGCTGTGCTTGGCACTGAACAAGTTGTGGATTGACCATCCATGAT 473
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      AGAAATCTAGTGTT--GCCG-GCTTGGCACTGAACAG--TGTGGACTGACCCATCATGA- 320
                                                                                   

consensus_10930#1      GCTCCTGGAAGCTCACCTGAG--------------------------------------- 494
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      GCTCCGGCAAGCTCACCGGACCGCCTGTCGCGTCGTATGGTAACCCGAGGCCGAGCCCGG 380
                                                                                   

consensus_10930#1      ------------------------------------------------------------
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      AGGACAGCATTGGGGATGGCTCCGGCTGTAACCGCGGCGGCCATTCGGGCAGCGAACTCG 440
                                                                                   

consensus_10930#1      ------------------------------------------------------------
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      CCGGGAGTGGCACTTGCATGGTTTCTTGGTGGTGATGGTGGTGGTGCTGTTGCTGCTGCC 500
                                                                                   

consensus_10930#1      ------------------------------------------------------------
consensus_10930#2      ------------------------------------------------------------
consensus_10930#0      CTGACGACGAAGGCGGCGCCGACGATGACGATGACATGTCGAGGCCCAGGCAGCGGAGAA 560
                                                                                   

consensus_10930#1      ---------------------------------------------------------
consensus_10930#2      ---------------------------------------------------------
consensus_10930#0      AGGACGAGCTAGACGAGGTGGCGCCCATCTGCGCGGCCTTCTGAAGCAACGCCGTGG 617