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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1148 fasta sequence
[GGCCTCGGCTAATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAGCAAAACAAAACTATCCTGAATTT]
[+] EMBL AK067222 [GGCCTCGGCTAATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATT ]
[+] EMBL CB659541 [ ATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCGACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGCTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTGTCAATTGCTTGTATCTTCAACTTCTC ]
[+] EMBL CB682874 [ AGCCCCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAG ]
[+] EMBL CA754021 [ GAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCCTAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGNTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAAC ]
[-] EMBL CB659542 [ GAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAGCAAAACAAAACTATCCTGAATTT]
[+] EMBL BI118694 [ ATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTAATTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGC ]
[+] EMBL BI118700 [ gTTTTTATGAAGAAGAAAGTGAACAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATACAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTGAATTCTGAGCTTGTTCCAGGAATGATGGGTGTCTTTGCATACAAGGCTGC ]
consensusID : consensus_10954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CGGGGTTCTCTAAGCTCTTTTTAGGGCCGAACCAAGGGGGGGTTTTTAAAATTTTGAAGCCCTATAAGGGTTTACCTTTGTGCTCCCTGCCCCCCGGGAAATGGAAGTGCGCGCCCAAGTTTTTTTGTGTTTCCAGGGGGTTTTTTTGGAGGGGCCCGGGAAGTTATGGCTTTTGGGAAGTTGCTTTCAGGTGGTTGGACCCTTCAAATTTCTCCATCGGGCACCCAAGATAATTTGTCAAAAGAAAGGTTGTTCCAGAAAATTTTATTGAAGAGGAAAGTGAAAAGAATCGGCATTAAGAAGCGAGGATTTGAAGAATCCCATAGAGAAAGGTGTTGGGTGGTATTTCCAGTAGCTCCTTTNGTCTCCNAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTGAATTNTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAAAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAAAAAAAAAA]
[-] EMBL CA762389 [CGGGGTTCTCTAAGCTCTTTTTAGGGCCGAACCAAGGGGGGGTTTTTAAAATTTTGAAGCCCTATAAGGGTTTACCTTTGTGCTCCCTGCCCCCCGGGAAATGGAAGTGCGCGCCCAAGTTTTTTTGTGTTTCCAGGGGGTTTTTTTGGAGGGGCCCGGGAAGTTATGGCTTTTGGGAAGTTGCTTTCAGGTGGTTGGACCCTTCAAATTTCTCCATCGGGCACCCAAGATAATTTGTCAAAAGAAAGGTTGTTCCAGAAAATTTTATTGAAGAGGAAAGTGAAAAGAATCGGCATTAAGAAGCGAGGATTTGAAGAATCCCATAGAGAAAGGTGTTGGGTGGTATTTCCAGTAGCTCCTTTNGTCTCCNAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTGAATTNTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAAAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10954#0 GGCCTCGGCTAATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCG 60
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 CCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGC 120
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 GCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACT 180
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 CCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGA 240
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 GGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCG 300
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 GCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCAC 360
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 CGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAG 420
consensus_10954#1 ------------------------------------------------------------
consensus_10954#0 ATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGC 480
consensus_10954#1 ------------------------------------CGGGGTTCTCT----AAGCTCTTT 20
* ** * *** * * **
consensus_10954#0 AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACT-TAAGGAT 539
consensus_10954#1 ----TTAGGGCCGAACCAAGGGGGGGTT-----TTTAAAATTTTGAAGCCCTATAAGGGT 71
* ** * ** * * ** * ** ** * ****** ** ***** *
consensus_10954#0 GAACTATTG--CTCCTGACCAC--AGGAATTGGAGCTGCGTGC---AGTTTATAC-TGTC 591
consensus_10954#1 TTACCTTTGTGCTCCCTGCCCCCCGGGAAATGGAAGTGCGCGCCCAAGTTTTTTTGTGTT 131
** *** **** ** * **** **** **** ** ***** * ***
consensus_10954#0 TCCTAGTCTTTTCTCTGGAGGCTGCTGTCA-GTTATG-CTTTTGG--AGTTGCTTTCAGT 647
consensus_10954#1 TCCAGGGGGTTTTTTTGGAGGGGCCCGGGAAGTTATGGCTTTTGGGAAGTTGCTTTCAGG 191
*** * *** * ****** * * * ****** ******* ************
consensus_10954#0 TGCTTGTATCTTC--AACTTCTCTATCGG-CACACA-GATAATTTGTCAAAGAAAGA--T 701
consensus_10954#1 TGGTTGGACCCTTCAAATTTCTCCATCGGGCACCCAAGATAATTTGTCAAAAGAAAGGTT 251
** *** * * * ** ***** ***** *** ** ************** ** *
consensus_10954#0 GTTCCAGAAATTTTTAT-GAAGAAGAAAGTGAAAAGAATCGGCAT-AAGAAGCGAGGATT 759
consensus_10954#1 GTTCCAGAAAATTTTATTGAAGAGGAAAGTGAAAAGAATCGGCATTAAGAAGCGAGGATT 311
********** ****** ***** ********************* **************
consensus_10954#0 TGAAGAATACAATAGAGAA-GGTGTTGGGTGGTATTTC-AGTAGCTC-TTTCGTCTCCAA 816
consensus_10954#1 TGAAGAATCCCATAGAGAAAGGTGTTGGGTGGTATTTCCAGTAGCTCCTTTNGTCTCCNA 371
******** * ******** ****************** ******** *** ****** *
consensus_10954#0 -GGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAAT 875
consensus_10954#1 AGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAAT 431
***********************************************************
consensus_10954#0 AGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCC 935
consensus_10954#1 AGCATTTTGAATTNTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCC 491
******** **** **********************************************
consensus_10954#0 GCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGAT 995
consensus_10954#1 GCTTTGG-ACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAAAAGAT 550
******* ********************************************** *****
consensus_10954#0 GCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAAT 1055
consensus_10954#1 GCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAAT 610
************************************************************
consensus_10954#0 CAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTAT 1115
consensus_10954#1 CAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTAT 670
************************************************************
consensus_10954#0 TTTTCTTCAGCAAAACAAAACTATCCTGAATTT 1148
consensus_10954#1 TTTTCTTCAAAAAAAAAA--------------- 688
********* **** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||