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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2002 fasta sequence
[GCAAGAAGAGGAAAGCAAGACGCGTCAAATCTATCAATCAGCTTCAGCCAAAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCACATCCTACCACAGGAAGCCTTTCAAACAACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGCTTTTGTGCAGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTTCTCATAATAACGCAATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAGGAGTAGGATAAACTTTAAGAGC]
[+] EMBL AK071754 [GCAAGAAGAGGAAAGCAAGACGCGTCAAATCTATCAATCAGCTTCAGCCAAAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCACATCCTACCACAGGAAGCCTTTCAAACAACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGCTTTTGTGCAGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTTCTCATAATAACGCAATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAGGAGTAGGAT ]
[-] EMBL CB664819 [ ATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTGGAGTGAGGACTTTTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGGTGGTGTCCTTGCAAAAGTTTCTCATAATAACGCAATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAGGAGTAGGATAAACTTTAAGAGC]
consensusID : consensus_11026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1316 fasta sequence
[GTCTTAATAACCAACCAATTTATCATTGCATTGCATTTCAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCA]
[+] EMBL AK071958 [GTCTTAATAACCAACCAATTTATCATTGCATTGCATTTCAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCA]
consensusID : consensus_11026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence
[AAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGANAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTA]
[+] EMBL CB664818 [AAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGCACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCTTCTTCAACCTCATCTCCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCTCCCTCTCCGTCGTCCTCAACGCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCCCCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGGCGGAGGGCATCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGACTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGAGTTGCAGAGATGANAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTA]
[+] EMBL D43605 [ GCATCCGATCGCCGGCGACGACCGAATCTNTGCCGGGCGGCAGGAAGGAGAGCGGCGATGGCAGCNATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCGCGTCGGAGGAGGGGAAGCGNCTGTTCTCGGAGGCCCTNGAGAGCGGGACCTTNCAAGGNTTCTTCAACCTCATCTCCGT ]
consensusID : consensus_11026#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence
[TTTGCCGCAATGGCGTCTAAACCAAGCAGCCGAGCGGAAAGCAACCAGGNGGCGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCGCGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGTTCTTCAGCCTCGTCTCCGTCTTCCAGACGCA-TCGGAGCCGGCCTTCTGCGGCCTCGCCACGCTCGCCGTCGTCCTCAACGCGCTCCGCATCGACCCGGGGCGGCGGTGGAANGGNCCCTGGCGGTGGTTCGACGAGTCCATGCTTCGACTG-TGCGAACAACTCGACACGGTCAGGGCGGAGGGGATCACCTTCGGCAAGGTCGCCTGCCTCGCCCACTGCTCCGGCGCCGACGTCCGCACCTTCCGCGCCGCCCAGGCCACGCTCGCCGACCTCCGCCGCCACCTCCTGCGCTGCGCCTCCTCCCAGGATTGCCATCTCGTCGCCTCCTACCACCGGAAGCTTCTCGGCCAGACTGGAACAGGGCATTTCTCGCCGATTGGCGGCTACCATGCTGGGCAGGACATGGCGCTGATCCTGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGCTGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGGTTCATGCTTATCTNCAGGAATACTGAAGCTCCTTTATTGATCCGTGCAGTGAATTGCAGGGATGAAAGCTGGCAAAGCATGGCA]
[+] EMBL AU108710 [TTTGCCGCAATGGCGTCTAAACCAAGCAGCCGAGCGGAAAGCAACCAGGNGGCGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCGCGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGTTCTTCAGCCTCGTCTCCGTCTTCCAGACGCA TCGGAGCCGGCCTTCTGCGGCCTCGCCACGCTCGCCGTCGTCCTCAACGCGCTCCGCATCGACCCGGGGCGGCGGTGGAANGGNCCCTGGCGGTGGTTCGACGAGTCCATGCTTCGACTG TGCGAACAACT ]
[+] EMBL CB646798 [ AAACCAAGCAGCCGAGCGGAAAGCAACCAGGCGGCGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCGCGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGTTCTTCAGCCTCGTCTCCGTCTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTCGCCACGCTCGCCGTCGTCCTCAACGCGCTCCGCATCGACCCGGGGCGGCGGTGGAAGGGCCCCTGGCGGTGGTTCGACGAGTCCATGC TCGACTGCTGCGAGCACCTCGACACGGTCAGGGCGGAGGGGATCACCTTCGGCAAGGTCGCCTGCCTCGCCCACTGCTCCGGCGCCGACGTCCGCACCTTCCGCGCCGCCCAGGCCACGCTCGCCGACCTCCGCCGCCACCTCCTGCGCTGCGCCTCCTCCCAGGATTGCCATCTCGTCGCCTCCTACCACCGGAAGCTTCTCGGCCAGACTGGAACAGGGCATTTCTCGCCGATTGGCGGCTACCATGCTGGGCAGGACATGGCGCTGATCCTGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGCTGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGGTTCATGCTTATCTNCAGGAATACTGAAGCTCCTTTATTGATCCGTGCAGTGAATTGCAGGGATGAAAGCTGGCAAAGCATGGCA]
consensusID : consensus_11026#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence
[TCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGGTTGTTTTTGTTAATCCTTCTCTTCTTCATTTCAAGGTCTTAATAACCAACCAATTTATCATTG]
[+] EMBL AF439787 [TCACCTTCGCCAAACTCGCCTGCCTCGCGCACTGCGCCGGTGCCAATGTCCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCGCCACCATCTCGTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTCAAACAGGTTGTTTTTGTTAATCCTTCTCTTCTTCATTTCAAGGTCTTAATAACCAACCAATTTATCATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 --------------------------------------GCAAGAAGAGGAAAGCAAGACG 22
consensus_11026#1 GTCTTAATAACCAACCAATTTATCATTGCATTGCATTTCAGACTGGAACCGGCCATTTCT 60
consensus_11026#2 ----------------------------AAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGC 32
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 CGTCAAATCTATCAATCAGCTTCAGCCAAAGCCGAGAGCCCCCCCAAAAGAGAGAGAAGC 82
consensus_11026#1 CTCCAATCGGCGGCTACCATGCCGGCCAAGACATGGCGCTTATCCTGGATGTCGCCCGCT 120
consensus_11026#2 ACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGA 92
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 --------TTTGCCGCAATGGCGTCTAAACCAAGCAGCCGAGCGGAAAGCAACCAGGNGG 52
consensus_11026#0 ACGCATCCGATCGCCGGCGACGACCGAATCTGTGCCGGGCGGCAGGAAGGAGAGCGGCGA 142
consensus_11026#1 TCAAATACCCTCCTCACTGGGTTCCACTCCCACTGCTTTGGGAAGCCATGAATACAACTG 180
consensus_11026#2 TGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCG 152
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 CGGCGGCGGTGCCGTCGCTGTACGGGCGCGCCCTGCCGTCGCCGCCGGCGGTGGAGTTCG 112
consensus_11026#0 TGGCAGCGATGGCATCCCTGTACCGGCGTGTCCTTCCTTCGCCGCCGGCTGTGGAGTTCG 202
consensus_11026#1 ATGACGCAACTGGTCTACTCAGGGGGTTCATGCTTATCTCAAGGCACACTGCAGCTCCTT 240
consensus_11026#2 CGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCT 212
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 CGTCGGCGGAGGGGCGGCGGCTGTTCGCGGAGGCGCTCCAGGGGGGCACCATGCAGGGGT 172
consensus_11026#0 CGTCGGAGGAGGGGAAGCGGCTGTTCTCGGAGGCCCTGGAGAGCGGGACCTTGCAAGGCT 262
consensus_11026#1 CATTGCTCTACACAGTGAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCA 300
consensus_11026#2 TCTTCAACCTCATCT-CCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTC-GC 270
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 TCTTCAGCCTCGTCT-CCGTCTTCCAGACGCA-TCGGAGCCGGCCTTCTGCGGCCTC-GC 229
consensus_11026#0 TCTTCAACCTCATCT-CCGTGTTCCAGACGCAGTCGGAGCCGGCCTTCTGCGGCCTC-GC 320
consensus_11026#1 TGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGT 360
consensus_11026#2 CTCCCTCTCCGTCGTCCTCAAC-GCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCC 329
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 CACGCTCGCCGTCGTCCTCAAC-GCGCTCCGCATCGACCCGGGGCGGCGGTGGAANGGNC 288
consensus_11026#0 CTCCCTCTCCGTCGTCCTCAAC-GCCCTCGCCATCGACCCGGGCCGCCAATGGAAGGGCC 379
consensus_11026#1 CCCGCTTAGTGAAATCCCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAG 420
consensus_11026#2 CCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGG 389
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 CCTGGCGGTGGTTCGACGAGTCCATGCTTCGACTGTGCGAACAACTCGACACGGTCAGGG 348
consensus_11026#0 CCTGGAGGTGGTTCGACGAGTCCATGCTTGACTGCTGCGAGCCCCTCGACAAGGTGAAGG 439
consensus_11026#1 TTAGGAGACAAGAGGAAGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTT 480
consensus_11026#2 CGGAGGGCATCAC-CTTCGCCAAACTCGCC-TGCCTCGCGCACTGCGCCGGTGCCAATGT 447
consensus_11026#4 ---------TCAC-CTTCGCCAAACTCGCC-TGCCTCGCGCACTGCGCCGGTGCCAATGT 49
consensus_11026#3 CGGAGGGGATCAC-CTTCGGCAAGGTCGCC-TGCCTCGCCCACTGCTCCGGCGCCGACGT 406
consensus_11026#0 CGGAGGGCATCAC-CTTCGCCAAACTCGCC-TGCCTCGCGCACTGCGCCGGTGCCAATGT 497
consensus_11026#1 TGAAGGAAATGATACTACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGT-CCGTGAA 539
* * ** * *** ** * * ** * * **
consensus_11026#2 CCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCG--------CCACCATCTC 499
consensus_11026#4 CCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCG--------CCACCATCTC 101
consensus_11026#3 CCGCACCTTCCGCGCCGCCCAGGCCACGCTCGCCGACCTCCG--------CCGCCACCTC 458
consensus_11026#0 CCGCTCCTTCCGCGCCGACCAGTCCACCATCCACGACTTCCG--------CCACCATCTC 549
consensus_11026#1 CTGCAATTCACTAAGCAGCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTT 599
* ** * * * *** * * * * *
consensus_11026#2 GTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTC 559
consensus_11026#4 GTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCGCATCCTACCACAGGAAGCCTTTC 161
consensus_11026#3 CTGCGCTGCGCCTCCTCCCAGGATTGCCATCTCGTCGCCTCCTACCACCGGAAGCTTCTC 518
consensus_11026#0 GTCCGCTCTGCCTCCTCCCAGGACTGCCATCTCATCACATCCTACCACAGGAAGCCTTTC 609
consensus_11026#1 ACCCGGATTGCAGCCTCTGTGTGCTGTCAAGGGGCCGCATTGC-TAACAGGGAATCTTTC 658
** ** **** * ** ** * * * ** ** * * **
consensus_11026#2 AAACAGA--------CTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCC 611
consensus_11026#4 AAACAGG--------TTGTTTTTGTTAATCCTTCTCTTCTTCAT---TTCAAGGTCTTAA 210
consensus_11026#3 GGCCAGA--------CTGGAACAGGGCATTTCTCGCCGATTGGCGGCTACCATGCTGGGC 570
consensus_11026#0 AAACA-A--------CTGGAACCGGCCATTTCTCTCCAATCGGCGGCTACCATGCCGGCC 660
consensus_11026#1 ATCAAAAGATGGGTTCTGCTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGA 718
* ** * * *
consensus_11026#2 AAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCAC 671
consensus_11026#4 TAACCAACCAATTTATCATTG--------------------------------------- 231
consensus_11026#3 AGGACATGGCGCTGATCCTGGATGTCGCTCGCTTCAAATACCCTCCTCATTGGATTCCGC 630
consensus_11026#0 AAGACATGGCGCTTATCCTGGATGTCGCCCGCTTCAAATACCCTCCTCACTGGGTTCCAC 720
consensus_11026#1 TGGGCCTAAGACTGTCGTTACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGA 778
* * *
consensus_11026#2 TCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGT 731
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 TGCCGCTTCTTTGGGAAGCCATGAACACGATTGATGAAGCAACTGGGCTTCTCAGGGGGT 690
consensus_11026#0 TCCCACTGCTTTGGGAAGCCATGAATACAACTGATGACGCAACTGGTCTACTCAGGGGGT 780
consensus_11026#1 TAT-GCTTCTACCGATATCCACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACG 837
consensus_11026#2 TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTG---------- 781
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 TCATGCTTATCTNCAGGAATACTGAAGCTCCTTTATTGATCCGTGCAGTG---------- 740
consensus_11026#0 TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGCTTTTGTGCA 840
consensus_11026#1 AGGTTGTCAAATATCCATCTAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATC 897
consensus_11026#2 -AGTTGCAGAGATGANAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTA----- 835
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 -AATTGCAGGGATGAAAGCTGGCAAAGCATGGCA-------------------------- 773
consensus_11026#0 GAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGA 900
consensus_11026#1 CTAGCACATGGGTGGGCATTAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTT 957
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTCTGTCCCGCTTAGTGAAATC 960
consensus_11026#1 CAACAGACATTCTTCATGATGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCC 1017
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 CCTTCCTGCCAATGCTGGAAATTTGATCAAATGGGTTATTGAAGTTAGGAGACAAGAGGA 1020
consensus_11026#1 ATTATGTGAGGTCCTGTAAAGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAAC 1077
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 AGGAGGATCAGGATTAAGCAAAGAGGAGGAAGAAAGGCTTATTTTGAAGGAAATGATACT 1080
consensus_11026#1 AATGATGCAAATCGCGCAGTTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGG 1137
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 ACAGCAAGTCCGTGATACTGAGCTTTTTAGATTAGTCCGTGAACTGCAATTCACTAAGCA 1140
consensus_11026#1 AACTACATACTCCGTATTACCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTG 1197
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 GCCATGTTGTAGTTGCTCATATTCAAGTGATGATGATTCCTTTACCCGGATTGCAGCCTC 1200
consensus_11026#1 ACCTGAGACGGATCCGTGTAGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTT 1257
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TGTGTGCTGTCAAGGGGCCGCATTGCTAACAGGGAATCTTTCATCAAAAGATGGGTTCTG 1260
consensus_11026#1 AGTGACAACTGACAACTAGCGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCA- 1316
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 CTGCAGAGAAACTTGCTTCAAATGTGTACAAGTGGATGGTGATGGGCCTAAGACTGTCGT 1320
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TACAGGCACAGCGGTTTCAGGAGTCAATGAACAAAGTGTTGATATGCTTCTACCGATATC 1380
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 CACATTGGAAACAAGCGTGTGCAATTCAAATTCAAGCAACGAGGTTGTCAAATATCCATC 1440
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TAGAACAGATATTTTAACTGTTCTATTGCTGGCTTTACATCCTAGCACATGGGTGGGCAT 1500
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TAAAGACGAGAGGCTGAAAGCTGAATTCCAGAGTCTTATTTCAACAGACATTCTTCATGA 1560
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TGATCTTAAACGAGAGATATTGCATCTAAGACGGCAACTCCATTATGTGAGGTCCTGTAA 1620
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 AGAGGAGGAATATGGAGATCCTGTGCCACAATCCCATTAACAATGATGCAAATCGCGCAG 1680
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 TTGGTTACCCTGGAGATGCAAAAAAAAGGGGTTAGAGGAGGAACTACATACTCCGTATTA 1740
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 CCTTTGTTTCGAGTGAGGACTTCTCATTTTTGAGACACCTGACCTGAGACGGATCCGTGT 1800
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 AGACATGTTCATGTTCATCACCTGTGGTCGTTTCTCTTGTTAGTGACAACTGACAACTAG 1860
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 CGGGGAGGCACACGCTAATTGTGCGGCTGGTGTCCTTGCAAAAGTTTCTCATAATAACGC 1920
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ------------------------------------------------------------
consensus_11026#4 ------------------------------------------------------------
consensus_11026#3 ------------------------------------------------------------
consensus_11026#0 AATGGCAGATATATTTTCACACTTTATTATTAAATAAAAATATTGAAAAGGGCAATTAAG 1980
consensus_11026#1 ------------------------------------------------------------
consensus_11026#2 ----------------------
consensus_11026#4 ----------------------
consensus_11026#3 ----------------------
consensus_11026#0 GAGTAGGATAAACTTTAAGAGC 2002
consensus_11026#1 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||