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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1458 fasta sequence
[ACACGCTTCCATCCCATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGGCTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCACCAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGTCGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGACGCCGTGGTGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT-CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACACTTGCA-GAGAACAGCTTTCAGATGCTGTCAACTGCAGAGAATTCAAAAAACTCTGTACGATCATGAGCATGAAACAATAGAGAATACACAGAAAAATTCAGTACCCAAAAAAA]
[+] EMBL AK105193 [ACACGCTTCCATCCCATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGGCTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCACCAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGTCGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGACGCCGTGGTGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACA ]
[+] EMBL CB679399 [ TCCATCCTATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACAGACTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGAGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACACTCGACGGCGGCTCCGCCTACGGGTTCCGCCCCGACCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGGCGCGGCGTCCCCTCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGACAAGGGAGCTCGGGACGACG ]
[+] EMBL CB678383 [ ATCCCCCCTCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGGTGATTTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGCCGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCGCGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGGCTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGCCGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGCGCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCACCAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGTCGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGACGCCGTGGTGCTCGCGCTCGTCCC ]
[-] EMBL CB679400 [ TGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACACCAATGTACTGTTCTAAGGAATAATAAGTAACCCATGAAC ]
[-] EMBL CB678384 [ GCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTTCGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACATCACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGAGGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAAGATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGGAGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACCGAGAGAACAAATATGTCCACCAATGTAGTGTTGGGATGAATAATAAGTAAACCATGAACACTTGCA GAAAAaaaagggg ]
[+] EMBL AU183872 [ TGCCGGTGATCGGGGANATGCCTGGAGTGAAGGGTTGCTATGTCGCCNCCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGCCACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGCGCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGTGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTTCCCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTNAAAAANACTGAGAGAACAAATATGTACAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACACTTGCATGAGAACAGCTTTCAGATGCTGTCAACTGCAGAGAATTCAAAAA ]
[+] EMBL C96958 [ GAGTAAGCGTGGAGTTTAGTGTAGATTGTGATGAGTTTGCTT CCTTGATGCCATGTCTGGNTGAATAAATTTGTTCTCTGTCTGCTGGTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTNCAACAATGTACTGTACTGATGAATAATAAGTAAACCATGAACACTTGCATGAGAACAGCTTTCAGATGCTGTCAACTGCAGAGAATTCATCACACTCTGTACGATCATGAGCATGAAACAATAGAGAATACACAGAAAAATTCAGTACCCAAAAAAA]
consensusID : consensus_11029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence
[CGGCGGGGNGCCGNGNGNCGCGTNGGTGATTTNCGGCGNCGGGGTCGTCGGAGCGTCTACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTNTCCCGACCCTCGTNNAGAAGTCGTCCCCGGCCTGCNCCGCCTCGGGCAAGGCCGGCGGCTTCC]
[+] EMBL AU108145 [CGGCGGGGNGCCGNGNGNCGCGTNGGTGATTTNCGGCGNCGGGGTCGTCGGAGCGTCTACGGCCTACTTCCTCTCCACCCACGCGGCCTCCCCGACTNTCCCGACCCTCGTNNAGAAGTCGTCCCCGGCCTGCNCCGCCTCGGGCAAGGCCGGCGGCTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11029#0 ACACGCTTCCATCCCATGGCGACCTCGCCGGCGGCGGCGCCGCCGCGGCGCGTGG-TGAT 59
consensus_11029#1 ----------------------------CGGCGG-GGNGCCGN-GNGNCGCGTNGGTGAT 30
****** ** **** * * ***** * ****
consensus_11029#0 TTGCGGCGGCGGGGTCGTCGGAGCGTGCACGGCCTACTTCCTCTCCACCCACGCGGCCTC 119
consensus_11029#1 TTNCGGCGNCGGGGTCGTCGGAGCGTCTACGGCCTACTTCCTCTCCACCCACGCGGCCTC 90
** ***** ***************** ********************************
consensus_11029#0 CCCGACTGTCCCGACCCTCGTCGAGAAGTCGTCCCCGGCCTGCGCCGCCTCGGGCAAGGC 179
consensus_11029#1 CCCGACTNTCCCGACCCTCGTNNAGAAGTCGTCCCCGGCCTGCNCCGCCTCGGGCAAGGC 150
******* ************* ******************** ****************
consensus_11029#0 CGGCGGCTTCCTCGCGCTCGACTGGTGCGACAAAACCCCGGCCCTCTCCGCGCTCGCTCG 239
consensus_11029#1 CGGCGGCTTCC------------------------------------------------- 161
***********
consensus_11029#0 CGCCTCCTTCGCGCTCCACCGCCGCCTCGCCGCCACGCTCGACGGCGGCTCCGCCTACGG 299
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CTTCCGCCCCGTCCACACCCTCTCCATCTGCCTCCCCACCGACCCGGACCCCGCCGCCGC 359
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CGCCGCCGCCGCGGCGTCCCCGCTGCTCCCCGCCTGGGTCGACCCCGCCGCGTCCGCCGC 419
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GCCGCCGAGGGAGCTCGGGACGACGGACACCACCGCGCAGGTCCACCCGGGCTTCTTCAC 479
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CAAGGCCGTCCTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGCGGAGCGCGTCGT 539
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CGTCCGGGACGGCCGCGTCGCCGGGGTTGTGGTCAGGGGCCGCGGCGAGGTGGACGCCGA 599
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CGCCGTGGTGCTCGCGCTCGTCCCCTGGTCGGGGAGGTTCGAGATGGTCAGGGAGGTGTT 659
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CGACGTGTCCGGCCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGTGAGCCCGAAAACAT 719
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CACGCCGCACGCCCTGTTCCTCAGCTACCAGCCAGAGCCCGGCGCCAAGATGCTCGACCC 779
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GGAGGTCTACCCGCGGCCCACCGGGGAGGTGTACATTTGTGGAATGACCAAGGATGAGGA 839
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GGTGCCCGATGACCCGGAGACGATCACCGGTGAGCCGGACTCAATTGCGATGCTGCACAA 899
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GATCGCCGGGAGGGTTTCCGGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGA 959
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GCAGGCTTGCTACCTGCCGTGCACCGATGACGGTTTGCCGGTGATCGGGGAGATGCCTGG 1019
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 AGTGAAGGGTTGCTATGTCGCCACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGC 1079
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CACCGGTGCCGCTCTCGCAGAGCTCATCCTCGACGGCGATGCCAAGATCGTCGATCTCGC 1139
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GCCGTTCAGCCCAGCAAGGTTTCTCAAGAAGAAGAGTAAGCGTGGAGTTTAGTGTAGATT 1199
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GTGATGAGTTTGCTTCCTTGATGCCATGTCTGGATGAATAAATTTGTTCTCTGTCTGCTG 1259
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GTATCCTTCATTCCTTTGTGAGGACTGAGAGAACAAATATGTACAACAATGTACTGTACT 1319
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 GATGAATAATAAGTAAACCATGAACACTTGCAGAGAACAGCTTTCAGATGCTGTCAACTG 1379
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 CAGAGAATTCAAAAAACTCTGTACGATCATGAGCATGAAACAATAGAGAATACACAGAAA 1439
consensus_11029#1 ------------------------------------------------------------
consensus_11029#0 AATTCAGTACCCAAAAAAA 1458
consensus_11029#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||