cluster # 11044

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Oryza sativa
cluster # 11044 cluster # 11044 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11044#0 length = 1266 sequences # 6

consensus_11044#1 length = 799 sequences # 1
consensus_11044#2 length = 370 sequences # 1

consensusID : consensus_11044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1266
fasta sequence

                              [CGGTCGCAGTCGCAGTCGCAGTGGGGATCAGCGGCGCCGCCGTGCGAAGAAGCCGGCGGAGATGCCGATCTGCCCGCCGTCGTCGGAATCCTCGCCGGCGCCGGGGTTGGGGGGGCGCGCGTTGATCTTCCACGGGTTGGCCCTCGGCGCGGCGGCGGCGGCTGCGGCGGCCGCGGCCTACTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATA-CCGGCGCGCTTCGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACAGAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGACGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGAATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCAGTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAAAAAAAAAAAAA]

[+] EMBL AK061788             [CGGTCGCAGTCGCAGTCGCAGTGGGGATCAGCGGCGCCGCCGTGCGAAGAAGCCGGCGGAGATGCCGATCTGCCCGCCGTCGTCGGAATCCTCGCCGGCGCCGGGGTTGGGGGGGCGCGCGTTGATCTTCCACGGGTTGGCCCTCGGCGCGGCGGCGGCGGCTGCGGCGGCCGCGGCCTACTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATA CCGGCGCGCTTCGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACAGAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGACGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGAATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCAGTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTT                                         ]
[+] EMBL AK098862             [                 GCAGTGGGGATCAGCGGCGCCGCCGTGCGAAGAAGCCGGCGGAGATGCCGATCTGCCCGCCGTCGTCGGAATCCTCGCCGGCGCCGGGGTTGGGGGGGCGCGCGTTGATCTTCCACGGGTTGGCCCTCGGCGCGGCGGCGGCGGCTGCGGCGGCCGCGGCCTACTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATA CCGGCGCGCTTCGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACAGAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGACGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGAATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATACTCAGTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGC                       ]
[+] EMBL CA756257             [                 GCAGTGGGGATCAGCGGCGCCGCCGTGCGAAGAAGCCGGCGGAGATGCCGATCTGCCCGCCGTCGTCGGAATCCTCGCCGGCGCCGGGGTTGGGGGGGCGCGCGTTGATCTTCCACGGGTTGGCCCTCGGCGCGGCGGCGGCGGCTGCGGCGGCCGCGGCCTACTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATA CCGGCGCGCTTCGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACAGAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGACGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGAATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTNCAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU181466             [                                                                                                                                                       GCGGCGGCGGCTGCGGCGGCCGCGGCCTACTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATACCCGGCGCGCTTCGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACAGAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGACGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGAATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU102005             [                                                                                                                                                                                                                               ATCATA CCGGCGCGCTTCGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACAGAGAACATNGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGACGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGAATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCAGTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGA                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU181465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTNTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAAAAAAAAAAAAA]




>consensus_11044#0
CGGTCGCAGTCGCAGTCGCAGTGGGGATCAGCGGCGCCGCCGTGCGAAGAAGCCGGCGGA
GATGCCGATCTGCCCGCCGTCGTCGGAATCCTCGCCGGCGCCGGGGTTGGGGGGGCGCGC
GTTGATCTTCCACGGGTTGGCCCTCGGCGCGGCGGCGGCGGCTGCGGCGGCCGCGGCCTA
CTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATACCGGCGCGCTT
CGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACA
GAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGA
CGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGA
ATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTA
TGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGG
TGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACT
GAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTA
TGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCA
GTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTA
TCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCT
TGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGC
GCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGA
AAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGT
ATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAA
AGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGA
ACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTAC
CAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAAAAAAA
AAAAAA

consensusID : consensus_11044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence

                              [TGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCAGTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAAAAAAAAAAAAAAGA]

[-] EMBL CB653252             [TGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCAGTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAAAAAAAAAAAAAAGA]




>consensus_11044#1
TGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTATGATATTGTTGTCAATAT
TCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGGTGTAGTTATGGCACTACA
GCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACTGAAACCTGAAGATGCATC
TGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTATGCAATATACTTCTCAAG
AGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCAGTTTCCATATCTTCTTCA
TCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTATCCAGAGCTTCCACCAAC
TCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCTTGAAAATGGATACAGGAT
GAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGCGCCTGAAGATGTTGAGAA
AATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTAC
GTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGC
ACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTG
AGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATT
TACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTT
TCGAAAAAAAAAAAAAAGA

consensusID : consensus_11044#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [TGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAGCGCTTCTCCATCGTTATTGTTATAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU102004             [TGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAGCGCTTCTCCATCGTTATTGTTATAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11044#2
TGCGTGCAAGGAACATCCAGTAGCATGAAAATGATCGATTTTGTACGTTGTGTGGTTACA
TGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATT
TGAGTTTGTAAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAAGCG
TTGCACTTCTTTCTTACAACGTTGAAGGAACATAGCGCATCTCCATTTACTGAAATGGCA
GTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCGAGTTTGTTCT
TGTTAATTAAGCTGTTAATGTTAGCGCTTCTCCATCGTTATTGTTATAAAAAAAAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11044#0      CGGTCGCAGTCGCAGTCGCAGTGGGGATCAGCGGCGCCGCCGTGCGAAGAAGCCGGCGGA 60
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      GATGCCGATCTGCCCGCCGTCGTCGGAATCCTCGCCGGCGCCGGGGTTGGGGGGGCGCGC 120
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      GTTGATCTTCCACGGGTTGGCCCTCGGCGCGGCGGCGGCGGCTGCGGCGGCCGCGGCCTA 180
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      CTTGTACAGGCGGCCGGGCGGGTTCCGCGGCCGCGCGGTGGGCATCATACCGGCGCGCTT 240
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      CGCCTCCTCCCGCTTCGAGGGGAAGCCGCTCGCCCCCATCCTCGGCAAGCCCATGATACA 300
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      GAGAACATGGGAAAGAGTTATGTTAGCCTCCTCTTTGGACCATGTTGTCGTGGCAACGGA 360
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      CGATGAAAGAATAGCTGAATGTTGTAGAGGATTCGGAGCTGATGTAATAATGACATCAGA 420
consensus_11044#1      ------------------------------------------------------------
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      ATCATGCAGAAATGGATCTGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTA 480
consensus_11044#1      ------------------TGAGCGTTGCTGTGAGGCTCTTCAAAAGCTAAACAAGCATTA 42
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      TGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGG 540
consensus_11044#1      TGATATTGTTGTCAATATTCAAGGAGACGAGCCTCTTATTGAACCAGAGATAATAGATGG 102
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      TGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACT 600
consensus_11044#1      TGTAGTTATGGCACTACAGCGAGCTCCTGATGCAGTCTTTAGCACAGCTGTCACTGCACT 162
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      GAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTA 660
consensus_11044#1      GAAACCTGAAGATGCATCTGATACAAATCGAGTGAAGTGTGTTTTAGATAACCAGGGTTA 222
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      TGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCA 720
consensus_11044#1      TGCAATATACTTCTCAAGAGGGCTGATTCCATTTAATAAATCAGGGAAAGTCAATCCTCA 282
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      GTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTA 780
consensus_11044#1      GTTTCCATATCTTCTTCATCTGGGCATTGCGGGCTTTGATTCCAAGTTTTTGAAGATCTA 342
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      TCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCT 840
consensus_11044#1      TCCAGAGCTTCCACCAACTCCATTACAGCTAGAAGAGGATCTCGAGCAACTTAAAGTTCT 402
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      TGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGC 900
consensus_11044#1      TGAAAATGGATACAGGATGAAGGTAATCAAAGTTGATCATGATGCCCATGGTGTGGATGC 462
consensus_11044#2      ------------------------------------------------------------
                                                                                   

consensus_11044#0      GCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGA 960
consensus_11044#1      GCCTGAAGATGTTGAGAAAATAGAAGCATTGATGCGTGCAAGGAACATCCAGTAGCATGA 522
consensus_11044#2      --------------------------------TGCGTGCAAGGAACATCCAGTAGCATGA 28
                                                       ****************************

consensus_11044#0      AAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGT 1020
consensus_11044#1      AAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGT 582
consensus_11044#2      AAATGATCGATTTTGTACGTTGTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGT 88
                       ************************************************************

consensus_11044#0      ATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAA 1080
consensus_11044#1      ATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAA 642
consensus_11044#2      ATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGTAAATTAGAAGCTGTTTGAA 148
                       ************************************************************

consensus_11044#0      AGTTGAATTACTGTTTTGAGTGTGCATA-GCGTTGCACTTCTTTCTTACAACGTTGAAGG 1139
consensus_11044#1      AGTTGAATTACTGTTTTGAGTGTGCATA-GCGTTGCACTTCTTTCTTACAACGTTGAAGG 701
consensus_11044#2      AGTTGAATTACTGTTTTGAGTGTGCATAAGCGTTGCACTTCTTTCTTACAACGTTGAAGG 208
                       **************************** *******************************

consensus_11044#0      AACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTA 1199
consensus_11044#1      AACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTA 761
consensus_11044#2      AACATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTA 268
                       ************************************************************

consensus_11044#0      CCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAAAAAA 1259
consensus_11044#1      CCAGGCCATACAGTTCGTTTCGAAAAAAAAAAAAAAGA---------------------- 799
consensus_11044#2      CCAGGCCATACAGTTCGTTTCGAGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAGCGCT 328
                       ***********************              *                      

consensus_11044#0      AAAAAAA----------------------------------- 1266
consensus_11044#1      ------------------------------------------
consensus_11044#2      TCTCCATCGTTATTGTTATAAAAAAAAAAAAAAAAAAAAAAA 370