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Oryza sativa
cluster # 11067 cluster # 11067       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11067#0 length = 2702 sequences # 2  
 consensus_11067#1 length = 875 sequences # 5  
consensus_11067#2 length = 430 sequences # 1  
consensusID : consensus_11067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2702
fasta sequence 
                              [CCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCGCGCCTCCCCTCTTCTTCTTGGATTCGACGGGGTGGCGCGGGGATGAACACGAGGCCGGTGGTGCTCGTCTTCCTCCTGCTGGTGCTCGTCATCACGTCGCAGTTCGAGTGGAAGCAGCAGATCGGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGGTGAGAGCGAGCAATCCATCCTTCTCCTCCTTATTGTTCGGGTTCTTTCTAGTCGCGATCTCTCACTTCTTTGGATACAGCTAGAAGCAAAACCAAACCTGCCCCCCAAACCATCCGTCACATTTGGTACTGTATATTTTTCTCCTTTAATTGAATTCAGTTAGCTTTATTACTCTACGATCTGAAATCAATTCAGATACTGCTTTAAATTTAAATGGGGGATCAACATTAGAATTCGATATTGCGCCTGTTTTCTTCGGCAATCAACTGTTGAAGAGGTTAGGATCGTGTGACCATAATTAAGGGATGTTCTCCAGGCTAGAAAGATACTACTGGTGATGACAGGACGCACCAACTATCACGACCTTTTCATGAAAAAGAAAGCTTTCTTCTATTGGAAGCATCAGGGAACCTTGCGTCCTCCAATTATAAGATCTGGCTTTTGAGGTTGAGTTGTGCTGCAAAGTACATCCAATTTCTTCTATTCCAATGTGATATACTACTAATCGCCAGTTTCTTGTATCTTTAATTAAATTTTGGGCAACTTCAACTTTGCTTGTAAACATTTTTTTTTTGTTAACCAGGCTAGGGTGTTGTTTCCTTAGGGGTATACTAGCCAGTTCCCTGAGGAATTTCTGACTGTAAATAATGAGATACTGAATGTCTGTGCAAACTAGTATGTCCACTTCACGGTTCCAAAAATAAATGAGGATTAAGAACAGGTTGGCAAATGTGATCTTGGAAGGAAATGTGTACAAAGATGATCATGTGGGCACTATTTAAAAATTCTACAGATGCACATGTTCTCTCTCTGTTTTTTTTTTTGTCCAGTGCACATTGTCTGCAAGTATGCATGTCCTAGGTTCTAACACGAACAACTTCCTACATCCATCATTTCTGTAAATTCTTAAGCATGCTAGTCTTCCTACATCCATCATTTCTGTAAATTCTTAAGCATGCTAGTCTGATATAGGTGTAAATCCTTCTATGAATATTTGTCTGTTCCTGTTTGTGATGTACCACGAATGTCATTCACTTTCAAGAATAGGATTGAGATGTGCATGAATTCTACGGATCCCACATATAACTTTGACCAGTACACATATGTTTATGTGAATTTGGAGCTTGTCTTACATTTGTGAAGGAAATTTAAGTCCTGGTATCCATGTATTGCCAGTATAATGATTCGTGGAATCCTTGTGACAAGCATATAAAATATCGGAATAATTTTGGTCTCGGTTAGCGAAAGTATATTTTAAAGAAAGTTGGCATTAGATTAAGCATTTTGGCTCGATCAATTGATATCTCGAATCTTGATTATGATTTGTAAATTGAATATATTTAGGTATAATTACTACAATTCTGAGATCTATTGTGACTCTTCTGCTACTGTGAGCATTTAATTTGCTGACTATTATTCACTTATTTTCTAGCATGTCTTCTCTTTCCATTTGGCAAGTGAAGATCAGTGCCTGTGAATGCCCTTCATAGTTTAGGCCATGTCATGGGGAGTCCATTCCTTCGAACAACCTTGTAAGGAGAAGTTGCTGGACTCGGTTACTTATAGCAAATGATTATCACTAGTGACTTTGGAGTATTGGTATTTAAAATGCTGGGACATGTCTAATAAAGATTAATCGAAATGCTAGACTTTAAATCATGAACATAAGATGTTGATCTATTATATCTGTTTGATTGTAAAAGAGGTGGAGCAATGAAGGACAGTAATTTTATAGCTAACCTGGAAATCATAAAGATGCAAGATTTGACTATACTGGTGTCTGTTGTTTGAATACGTTCTTCTATCTTGCTCTATATTGGTTTACAAGGCCATGATTCTTTGCATAGTTTTCTCATTGAAGATTTACATGCTATTTTTCTATCTACAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGAAAAA]

[+] EMBL AK065043             [CCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCGCGCCTCCCCTCTTCTTCTTGGATTCGACGGGGTGGCGCGGGGATGAACACGAGGCCGGTGGTGCTCGTCTTCCTCCTGCTGGTGCTCGTCATCACGTCGCAGTTCGAGTGGAAGCAGCAGATCGGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGGTGAGAGCGAGCAATCCATCCTTCTCCTCCTTATTGTTCGGGTTCTTTCTAGTCGCGATCTCTCACTTCTTTGGATACAGCTAGAAGCAAAACCAAACCTGCCCCCCAAACCATCCGTCACATTTGGTACTGTATATTTTTCTCCTTTAATTGAATTCAGTTAGCTTTATTACTCTACGATCTGAAATCAATTCAGATACTGCTTTAAATTTAAATGGGGGATCAACATTAGAATTCGATATTGCGCCTGTTTTCTTCGGCAATCAACTGTTGAAGAGGTTAGGATCGTGTGACCATAATTAAGGGATGTTCTCCAGGCTAGAAAGATACTACTGGTGATGACAGGACGCACCAACTATCACGACCTTTTCATGAAAAAGAAAGCTTTCTTCTATTGGAAGCATCAGGGAACCTTGCGTCCTCCAATTATAAGATCTGGCTTTTGAGGTTGAGTTGTGCTGCAAAGTACATCCAATTTCTTCTATTCCAATGTGATATACTACTAATCGCCAGTTTCTTGTATCTTTAATTAAATTTTGGGCAACTTCAACTTTGCTTGTAAACATTTTTTTTTTGTTAACCAGGCTAGGGTGTTGTTTCCTTAGGGGTATACTAGCCAGTTCCCTGAGGAATTTCTGACTGTAAATAATGAGATACTGAATGTCTGTGCAAACTAGTATGTCCACTTCACGGTTCCAAAAATAAATGAGGATTAAGAACAGGTTGGCAAATGTGATCTTGGAAGGAAATGTGTACAAAGATGATCATGTGGGCACTATTTAAAAATTCTACAGATGCACATGTTCTCTCTCTGTTTTTTTTTTTGTCCAGTGCACATTGTCTGCAAGTATGCATGTCCTAGGTTCTAACACGAACAACTTCCTACATCCATCATTTCTGTAAATTCTTAAGCATGCTAGTCTTCCTACATCCATCATTTCTGTAAATTCTTAAGCATGCTAGTCTGATATAGGTGTAAATCCTTCTATGAATATTTGTCTGTTCCTGTTTGTGATGTACCACGAATGTCATTCACTTTCAAGAATAGGATTGAGATGTGCATGAATTCTACGGATCCCACATATAACTTTGACCAGTACACATATGTTTATGTGAATTTGGAGCTTGTCTTACATTTGTGAAGGAAATTTAAGTCCTGGTATCCATGTATTGCCAGTATAATGATTCGTGGAATCCTTGTGACAAGCATATAAAATATCGGAATAATTTTGGTCTCGGTTAGCGAAAGTATATTTTAAAGAAAGTTGGCATTAGATTAAGCATTTTGGCTCGATCAATTGATATCTCGAATCTTGATTATGATTTGTAAATTGAATATATTTAGGTATAATTACTACAATTCTGAGATCTATTGTGACTCTTCTGCTACTGTGAGCATTTAATTTGCTGACTATTATTCACTTATTTTCTAGCATGTCTTCTCTTTCCATTTGGCAAGTGAAGATCAGTGCCTGTGAATGCCCTTCATAGTTTAGGCCATGTCATGGGGAGTCCATTCCTTCGAACAACCTTGTAAGGAGAAGTTGCTGGACTCGGTTACTTATAGCAAATGATTATCACTAGTGACTTTGGAGTATTGGTATTTAAAATGCTGGGACATGTCTAATAAAGATTAATCGAAATGCTAGACTTTAAATCATGAACATAAGATGTTGATCTATTATATCTGTTTGATTGTAAAAGAGGTGGAGCAATGAAGGACAGTAATTTTATAGCTAACCTGGAAATCATAAAGATGCAAGATTTGACTATACTGGTGTCTGTTGTTTGAATACGTTCTTCTATCTTGCTCTATATTGGTTTACAAGGCCATGATTCTTTGCATAGTTTTCTCATTGAAGATTTACATGCTATTTTTCTATCTACAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAA                  ]
[+] EMBL AU165115             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGCAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGAAAAA]




>consensus_11067#0
CCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCC
TCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCAT
CCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTC
TTGGTAATTAAGCCGCGCGGCGCGCGCCTCCCCTCTTCTTCTTGGATTCGACGGGGTGGC
GCGGGGATGAACACGAGGCCGGTGGTGCTCGTCTTCCTCCTGCTGGTGCTCGTCATCACG
TCGCAGTTCGAGTGGAAGCAGCAGATCGGGGACGCCGCCGCCGACCCCGCCGACGCGCGC
CGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGGTGAGAGCGAGCAAT
CCATCCTTCTCCTCCTTATTGTTCGGGTTCTTTCTAGTCGCGATCTCTCACTTCTTTGGA
TACAGCTAGAAGCAAAACCAAACCTGCCCCCCAAACCATCCGTCACATTTGGTACTGTAT
ATTTTTCTCCTTTAATTGAATTCAGTTAGCTTTATTACTCTACGATCTGAAATCAATTCA
GATACTGCTTTAAATTTAAATGGGGGATCAACATTAGAATTCGATATTGCGCCTGTTTTC
TTCGGCAATCAACTGTTGAAGAGGTTAGGATCGTGTGACCATAATTAAGGGATGTTCTCC
AGGCTAGAAAGATACTACTGGTGATGACAGGACGCACCAACTATCACGACCTTTTCATGA
AAAAGAAAGCTTTCTTCTATTGGAAGCATCAGGGAACCTTGCGTCCTCCAATTATAAGAT
CTGGCTTTTGAGGTTGAGTTGTGCTGCAAAGTACATCCAATTTCTTCTATTCCAATGTGA
TATACTACTAATCGCCAGTTTCTTGTATCTTTAATTAAATTTTGGGCAACTTCAACTTTG
CTTGTAAACATTTTTTTTTTGTTAACCAGGCTAGGGTGTTGTTTCCTTAGGGGTATACTA
GCCAGTTCCCTGAGGAATTTCTGACTGTAAATAATGAGATACTGAATGTCTGTGCAAACT
AGTATGTCCACTTCACGGTTCCAAAAATAAATGAGGATTAAGAACAGGTTGGCAAATGTG
ATCTTGGAAGGAAATGTGTACAAAGATGATCATGTGGGCACTATTTAAAAATTCTACAGA
TGCACATGTTCTCTCTCTGTTTTTTTTTTTGTCCAGTGCACATTGTCTGCAAGTATGCAT
GTCCTAGGTTCTAACACGAACAACTTCCTACATCCATCATTTCTGTAAATTCTTAAGCAT
GCTAGTCTTCCTACATCCATCATTTCTGTAAATTCTTAAGCATGCTAGTCTGATATAGGT
GTAAATCCTTCTATGAATATTTGTCTGTTCCTGTTTGTGATGTACCACGAATGTCATTCA
CTTTCAAGAATAGGATTGAGATGTGCATGAATTCTACGGATCCCACATATAACTTTGACC
AGTACACATATGTTTATGTGAATTTGGAGCTTGTCTTACATTTGTGAAGGAAATTTAAGT
CCTGGTATCCATGTATTGCCAGTATAATGATTCGTGGAATCCTTGTGACAAGCATATAAA
ATATCGGAATAATTTTGGTCTCGGTTAGCGAAAGTATATTTTAAAGAAAGTTGGCATTAG
ATTAAGCATTTTGGCTCGATCAATTGATATCTCGAATCTTGATTATGATTTGTAAATTGA
ATATATTTAGGTATAATTACTACAATTCTGAGATCTATTGTGACTCTTCTGCTACTGTGA
GCATTTAATTTGCTGACTATTATTCACTTATTTTCTAGCATGTCTTCTCTTTCCATTTGG
CAAGTGAAGATCAGTGCCTGTGAATGCCCTTCATAGTTTAGGCCATGTCATGGGGAGTCC
ATTCCTTCGAACAACCTTGTAAGGAGAAGTTGCTGGACTCGGTTACTTATAGCAAATGAT
TATCACTAGTGACTTTGGAGTATTGGTATTTAAAATGCTGGGACATGTCTAATAAAGATT
AATCGAAATGCTAGACTTTAAATCATGAACATAAGATGTTGATCTATTATATCTGTTTGA
TTGTAAAAGAGGTGGAGCAATGAAGGACAGTAATTTTATAGCTAACCTGGAAATCATAAA
GATGCAAGATTTGACTATACTGGTGTCTGTTGTTTGAATACGTTCTTCTATCTTGCTCTA
TATTGGTTTACAAGGCCATGATTCTTTGCATAGTTTTCTCATTGAAGATTTACATGCTAT
TTTTCTATCTACAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTA
TTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCA
CAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGAT
GGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAA
CAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAAT
CACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAAC
ATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGAAA
AA

consensusID : consensus_11067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 875
fasta sequence 
                              [GCGAGTTTCCTTTGGCAACCAACCAAAGTCGTCGTCTTCCTCCTCTCGCACTTTACTCCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCGCGCC-TC-CCCTCTTCTTCTT-GGATTCGACGGGGTGGCGCGGGGATGAACAC-GAGGCCGGT-GGTGCTCGTCTTCC-TCCTGCTGGTGCTCGTC-ATCACGTCGCAGTTCGAGTGGAAGCAGCAGATC-GGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGATTAAAAAAA]

[+] EMBL AK072884             [GCGAGTTTCCTTTGGCAACCAACCAAAGTCGTCGTCTTCCTCCTCTCGCACTTTACTCCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCGCGCC TC CCCTCTTCTTCTT GGATTCGACGGGGTGGCGCGGGGATGAACAC GAGGCCGGT GGTGCTCGTCTTCC TCCTGCTGGTGCTCGTC ATCACGTCGCAGTTCGAGTGGAAGCAGCAGATC GGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAA                       ]
[+] EMBL OSS16545A            [                      CCAAAGTCGTCGTCTTCCTCCTCTCGCACTTTACTCCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGGGGNGATCCTCATCCGCCCCGNGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCG GCCTTCNCCCTCTTCTTCTTGGGATTCGACGGGGTGGCGCGGGGATGAACACGGAGGCCGGTGGGTGCTCGTTTTCCTTCCTNCTGGTGCTCGTCAATCACGTCGCAGTTCGAGTNGAAGCAGCAGATCGGGGGACGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK098969             [                                                                          CCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCGCGCC TC CCCTCTTCTTCTT GGATTCGACGGGGTGGCGCGGGGATGAACAC GAGGCCGGT GGTGCTCGTCTTCC TCCTGCTGGTGCTCGTC ATCACGTCGCAGTTCGAGTGGAAGCAGCAGATC GGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGATT       ]
[+] EMBL CF335950             [                                                                                                   TGTCCACCTCCACGCTCCTCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTGGTAATTAAGCCGCGCGGCGCGCGCC TC CCCTCTTCTTCTT GGATTCGACGGGGTGGCGCGGGGATGAACAC GAGGCCGGT GGTGCTCGTCTTCC TCCTGCTGGTGCTCGTC ATCACGTCGCAGTTCGAGTGGAAGCAGCAGATC GGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGCAGGCACCAGGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF335951             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTTCACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACAAATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGATTAAAAAAA]




>consensus_11067#1
GCGAGTTTCCTTTGGCAACCAACCAAAGTCGTCGTCTTCCTCCTCTCGCACTTTACTCCC
CTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCCTCC
TCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCATCCG
CCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTCTTG
GTAATTAAGCCGCGCGGCGCGCGCCTCCCCTCTTCTTCTTGGATTCGACGGGGTGGCGCG
GGGATGAACACGAGGCCGGTGGTGCTCGTCTTCCTCCTGCTGGTGCTCGTCATCACGTCG
CAGTTCGAGTGGAAGCAGCAGATCGGGGACGCCGCCGCCGACCCCGCCGACGCGCGCCGC
AGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGATAATATTTTCTCAGGAG
AAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAGCGGCAGCTCCTGCATTGC
CGTGGTAGCAACAACACTGTCCACACCACAACAGTTTCTCATACTGAAGTTAGTGAGGTG
GACGGGCAGGAAAGCATTGATGATTGATGGTATTGGTAGATAACCTCTTGGCAGGTTGTT
CACTGATTCTAGTACAGAAGCCAAAGAACAACGGCTGATCAGGCAGCACCATACTCTACA
AATGCCATCTAATAGGGAGGTACCAAATCACACTGTATTGTACACTTGCTACCAGTGTTT
CTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACT
AATTCAATTGAAAAGTTGCTTGATGATTAAAAAAA

consensusID : consensus_11067#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence 
                              [TTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAACGGCAGCTCCTGCATTNCCGTGGGAACCAACCAACCCCTGTTCCCCCCCCAACCAGTTTTTCAAACTNAAAGTAATNAGGGGGGCGGGCAAGAAAACCATTAATGATTATGGGTATGGGTAGAAAACCCTCTGGCCAGGTGGTCCNCTGATTCTAGGTCCAAAAGCCAAAGACCACCGGCTGTTCAGGCAGCACCCATACTCTNCAAAATGCCATCTAATAGGGAGGGTCCCAAAATCNCACTGTATTGTACACTTTGCTACCCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGATTCTTTTGTTGTGATAAAAA]

[+] EMBL AU174133             [TTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAACGGCAGCTCCTGCATTNCCGTGGGAACCAACCAACCCCTGTTCCCCCCCCAACCAGTTTTTCAAACTNAAAGTAATNAGGGGGGCGGGCAAGAAAACCATTAATGATTATGGGTATGGGTAGAAAACCCTCTGGCCAGGTGGTCCNCTGATTCTAGGTCCAAAAGCCAAAGACCACCGGCTGTTCAGGCAGCACCCATACTCTNCAAAATGCCATCTAATAGGGAGGGTCCCAAAATCNCACTGTATTGTACACTTTGCTACCCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGATTCTTTTGTTGTGATAAAAA]




>consensus_11067#2
TTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTATTGAGAGCCTTCAACGGCAGC
TCCTGCATTNCCGTGGGAACCAACCAACCCCTGTTCCCCCCCCAACCAGTTTTTCAAACT
NAAAGTAATNAGGGGGGCGGGCAAGAAAACCATTAATGATTATGGGTATGGGTAGAAAAC
CCTCTGGCCAGGTGGTCCNCTGATTCTAGGTCCAAAAGCCAAAGACCACCGGCTGTTCAG
GCAGCACCCATACTCTNCAAAATGCCATCTAATAGGGAGGGTCCCAAAATCNCACTGTAT
TGTACACTTTGCTACCCAGTGTTTCTCTGGTAAGATTGTAGAGAGCTGTAACATGTAATA
TGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAGTTGCTTGATGATTCTTTTGTT
GTGATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CCCCTCCCCCTCCTCTCCCTCTTCCCCCAACTGCAAAGCAGCTGTCCACCTCCACGCTCC 60
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TCCTCCTCCCCCAACCCCAACCTCTCCGCCTTCCCTCTCGCCGGCGGCGGGGATCCTCAT 120
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CCGCCCCGCGACGCCCGGCCCTAACCGCGGCGGAGATCCGTGGAGGGTGGGGGGACATTC 180
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TTGGTAATTAAGCCGCGCGGCGCGCGCCTCCCCTCTTCTTCTTGGATTCGACGGGGTGGC 240
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GCGGGGATGAACACGAGGCCGGTGGTGCTCGTCTTCCTCCTGCTGGTGCTCGTCATCACG 300
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TCGCAGTTCGAGTGGAAGCAGCAGATCGGGGACGCCGCCGCCGACCCCGCCGACGCGCGC 360
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CGCAGGCACCAGGGCCTCGCCAAGGAGGACGCCGTCAAGGAGAAGGTGAGAGCGAGCAAT 420
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CCATCCTTCTCCTCCTTATTGTTCGGGTTCTTTCTAGTCGCGATCTCTCACTTCTTTGGA 480
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TACAGCTAGAAGCAAAACCAAACCTGCCCCCCAAACCATCCGTCACATTTGGTACTGTAT 540
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      ATTTTTCTCCTTTAATTGAATTCAGTTAGCTTTATTACTCTACGATCTGAAATCAATTCA 600
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GATACTGCTTTAAATTTAAATGGGGGATCAACATTAGAATTCGATATTGCGCCTGTTTTC 660
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TTCGGCAATCAACTGTTGAAGAGGTTAGGATCGTGTGACCATAATTAAGGGATGTTCTCC 720
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      AGGCTAGAAAGATACTACTGGTGATGACAGGACGCACCAACTATCACGACCTTTTCATGA 780
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      AAAAGAAAGCTTTCTTCTATTGGAAGCATCAGGGAACCTTGCGTCCTCCAATTATAAGAT 840
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CTGGCTTTTGAGGTTGAGTTGTGCTGCAAAGTACATCCAATTTCTTCTATTCCAATGTGA 900
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TATACTACTAATCGCCAGTTTCTTGTATCTTTAATTAAATTTTGGGCAACTTCAACTTTG 960
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CTTGTAAACATTTTTTTTTTGTTAACCAGGCTAGGGTGTTGTTTCCTTAGGGGTATACTA 1020
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GCCAGTTCCCTGAGGAATTTCTGACTGTAAATAATGAGATACTGAATGTCTGTGCAAACT 1080
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      AGTATGTCCACTTCACGGTTCCAAAAATAAATGAGGATTAAGAACAGGTTGGCAAATGTG 1140
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      ATCTTGGAAGGAAATGTGTACAAAGATGATCATGTGGGCACTATTTAAAAATTCTACAGA 1200
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TGCACATGTTCTCTCTCTGTTTTTTTTTTTGTCCAGTGCACATTGTCTGCAAGTATGCAT 1260
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GTCCTAGGTTCTAACACGAACAACTTCCTACATCCATCATTTCTGTAAATTCTTAAGCAT 1320
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GCTAGTCTTCCTACATCCATCATTTCTGTAAATTCTTAAGCATGCTAGTCTGATATAGGT 1380
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GTAAATCCTTCTATGAATATTTGTCTGTTCCTGTTTGTGATGTACCACGAATGTCATTCA 1440
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CTTTCAAGAATAGGATTGAGATGTGCATGAATTCTACGGATCCCACATATAACTTTGACC 1500
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      AGTACACATATGTTTATGTGAATTTGGAGCTTGTCTTACATTTGTGAAGGAAATTTAAGT 1560
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CCTGGTATCCATGTATTGCCAGTATAATGATTCGTGGAATCCTTGTGACAAGCATATAAA 1620
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      ATATCGGAATAATTTTGGTCTCGGTTAGCGAAAGTATATTTTAAAGAAAGTTGGCATTAG 1680
                                                                                   

consensus_11067#1      ------------------------------------------------------------
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      ATTAAGCATTTTGGCTCGATCAATTGATATCTCGAATCTTGATTATGATTTGTAAATTGA 1740
                                                                                   

consensus_11067#1      ---------------------------------GCGAGTTTCCTTTGGCAACCAACCAAA 27
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      ATATATTTAGGTATAATTACTACAATTCTGAGATCTATTGTGACTCTTCTGCTACTGTGA 1800
                                                                                   

consensus_11067#1      GTCGTCGTCTTCCTC-CTCTCGCAC-TTTACTCCCCTCCCCCTCCTCTCCCTCT-TCCCC 84
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GCATTTAATTTGCTGACTATTATTCACTTATTTTCTAGCATGTCTTCTCTTTCCATTTGG 1860
                                                                                   

consensus_11067#1      CAACTGCAAAGCAG---CTGTCCA---CCTCCACGCTCCTCCTCCTCCCCCA---ACCCC 135
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      CAAGTGAAGATCAGTGCCTGTGAATGCCCTTCATAGTTTAGGCCATGTCATGGGGAGTCC 1920
                                                                                   

consensus_11067#1      AACCTCTCCGCCTTCCCTCTCGCCGGCGGCGG--GGATCCTCATCCGCCCCGCGA-CGCC 192
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      ATTCCTTCGAACAACCTTGTAAGGAGAAGTTGCTGGACTCGGTTACTTATAGCAAATGAT 1980
                                                                                   

consensus_11067#1      CGGCCCTAACCGCGGCGGAG-ATCCGTGG--AGGGTGGGGGGACATTCTTGGTAA----- 244
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TATCACTAGTGACTTTGGAGTATTGGTATTTAAAATGCTGGGACATGTCTAATAAAGATT 2040
                                                                                   

consensus_11067#1      ----------TTAAGCCGCGCGGCGCGCGCCTCCCCTCTTCTTCT--TGGATTCGACGGG 292
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      AATCGAAATGCTAGACTTTAAATCATGAACATAAGATGTTGATCTATTATATCTGTTTGA 2100
                                                                                   

consensus_11067#1      GTGGCGCGGGGATGAACACGAGGCCGGTGGTGCTCGTCTTCCT--CCTGCTGGTGCTCGT 350
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TTGTAAAAGAGGTGGAGCAATGAAGGACAGTAATTTTATAGCTAACCTGGAAATCATAAA 2160
                                                                                   

consensus_11067#1      CAT-CACGTCGCAGTTCGAGTGGAAGCAGCAGATCGGGGACG-----CCGCCGCCGACCC 404
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      GATGCAAGATTTGACTATACTGGTGTCTGTTGTTTGAATACGTTCTTCTATCTTGCTCTA 2220
                                                                                   

consensus_11067#1      CGCCGACGCGC---GCCGCAG------GCACCAGGGCCTCGCCAAGGA---GGACGCCGT 452
consensus_11067#2      ------------------------------------------------------------
consensus_11067#0      TATTGGTTTACAAGGCCATGATTCTTTGCATAGTTTTCTCATTGAAGATTTACATGCTAT 2280
                                                                                   

consensus_11067#1      ----CAAGGAGAAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTA 508
consensus_11067#2      ---------------------TTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTA 39
consensus_11067#0      TTTTCTATCTACAGATAATATTTTCTCAGGAGAAAAATATTCAACAACTTAACGAGCTTA 2340
                                            ***************************************

consensus_11067#1      TTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGC-AACAA--CACTGTCCACA 565
consensus_11067#2      TTGAGAGCCTTCAACGGCAGCTCCTGCATTNCCGTGGGAACCAACCAACCCCTGTTCCCC 99
consensus_11067#0      TTGAGAGCCTTCAGCGGCAGCTCCTGCATTGCCGTGGTAGC-AACAA--CACTGTCCACA 2397
                       ************* **************** ****** * * *** *  * **** * * 

consensus_11067#1      CCACAAC-AGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGC-ATTGATGA 623
consensus_11067#2      CCCCAACCAGTTTTTCAAACTNAAAGTAATNAGGGGGGCGGGCAAGAAAACCATTAATGA 159
consensus_11067#0      CCACAAC-AGTTTCTCATACTGAAGTTAGTGAGGTGGACGGGCAGGAAAGC-ATTGATGA 2455
                       ** **** ***** *** *** **  ** * *** ** ****** **** * *** ****

consensus_11067#1      TTGATGGTATTGGTAGATAACCTCTTGGC-AGGTTGTTCACTGATTCTAG-TACAGAAGC 681
consensus_11067#2      TTATGGGTATGGGTAGAAAACCCTCTGGCCAGGTGGTCCNCTGATTCTAGGTCCAAAAGC 219
consensus_11067#0      TTGATGGTATTGGTAGATAACCTCTTGGC-AGGTTGTTCACTGATTCTAG-TACAGAAGC 2513
                       **   ***** ****** ****   **** **** ** * ********** * ** ****

consensus_11067#1      CAAAGAACAACGGCTGATCAGGCAGCACC-ATACTCTACAAA-TGCCATCTAATAGGGAG 739
consensus_11067#2      CAAAGACCACCGGCTGTTCAGGCAGCACCCATACTCTNCAAAATGCCATCTAATAGGGAG 279
consensus_11067#0      CAAAGAACAACGGCTGATCAGGCAGCACC-ATACTCTACAAA-TGCCATCTAATAGGGAG 2571
                       ****** ** ****** ************ ******* **** *****************

consensus_11067#1      GTACC--AAATCACACTGTATTGTACACTT-GCTACC-AGTGTTTCTCTGGTAAGATTGT 795
consensus_11067#2      GGTCCCAAAATCNCACTGTATTGTACACTTTGCTACCCAGTGTTTCTCTGGTAAGATTGT 339
consensus_11067#0      GTACC--AAATCACACTGTATTGTACACTT-GCTACC-AGTGTTTCTCTGGTAAGATTGT 2627
                       *  **  ***** ***************** ****** **********************

consensus_11067#1      AGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAG 855
consensus_11067#2      AGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAG 399
consensus_11067#0      AGAGAGCTGTAACATGTAATATGTTGGTTTTAGGTCACGGCCACTAATTCAATTGAAAAG 2687
                       ************************************************************

consensus_11067#1      TTGCTTGATGATT-----------AAAAAAA 875
consensus_11067#2      TTGCTTGATGATTCTTTTGTTGTGATAAAAA 430
consensus_11067#0      TTGCTTGATGAAAAA---------------- 2702
                       ***********


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)