cluster # 11070

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Oryza sativa
cluster # 11070 cluster # 11070 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11070#0 length = 898 sequences # 6

consensus_11070#1 length = 352 sequences # 1
consensus_11070#2 length = 308 sequences # 1

consensusID : consensus_11070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 898
fasta sequence

                              [ACCTCCCGTGAGAGATCTCCTCTTGTGCGGGCGGAGATCCACAGCCGGCGGGCTCGACCTCCTCCTCGGGCGCCATCCACGCGCGCGCGATGTTCTCCTTCGGCGGCGGGTCGTCGCTGACGTCGGTGGTGCCGGACGCGACCCCGGCCCCGGCGGCGCCGCCGGGCACCGGGACGGGCGCCAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACCGCGAGTGGCACCGGCCGCTCCGCAC-GCTCGACCCCACCCAGGACCAG-AAGCTCATGTTC-GGCCTCCTCTTCTCCCTCCGCTCCTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGGGGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACATA-CAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCA-AGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGTTGTA-AAAAATCCTTTGTACGCTCCTGGCACACCAATCAA---GTGCGAGCTTTTCAATAAGCA-CCTTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCA-GTGTGCTATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATCACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCTGTTGAACTGCACAAAGTTGTTGATGTTGAGTGTTCGTTTTGAAAATTGAGATCTAAAAAAAAAAAAA]

[+] EMBL AK058445             [ACCTCCCGTGAGAGATCTCCTCTTGTGCGGGCGGAGATCCACAGCCGGCGGGCTCGACCTCCTCCTCGGGCGCCATCCACGCGCGCGCGATGTTCTCCTTCGGCGGCGGGTCGTCGCTGACGTCGGTGGTGCCGGACGCGACCCCGGCCCCGGCGGCGCCGCCGGGCACCGGGACGGGCGCCAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACCGCGAGTGGCACCGGCCGCTCCGCAC GCTCGACCCCACCCAGGACCAG AAGCTCATGTTC GGCCTCCTCTTCTCCCTCCGCTCCTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGGGGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACATA CAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCA AGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGTTGTA AAAAATCCTTTGTACGCTCCTGGCACACCAATCAA   GTGCGAGCTTTTCAATAAGCA CCTTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCA GTGTGCTATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATCACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCT                                                                   ]
[+] EMBL AK068877             [                                      CCACAGCCGGCGGGCTCGACCTCCTCCTCGGGCGCCATCCACGCGCGCGCGATGTTCTCCTTCGGCGGCGGGTCGTCGCTGACGTCGGTGGTGCCGGACGCGACCCCGGCCCCGGCGGCGCCGCCGGGCACCGGGACGGGCGCCAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACCGCGAGTGGCACCGGCCGCTCCGCAC GCTCGACCCCACCCAGGACCAG AAGCTCATGTTC GGCCTCCTCTTCTCCCTCCGCTCCTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGGGGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACATA CAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCA AGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGTTGTA AAAAATCCTTTGTACGCTCCTGGCACACCAATCAACAGGTGCGAGCTTTTCAATAAGCA CCTTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCA GTGTGCTATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATCACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCTGTTGAACTGCACAAAGTTGTTGATGTTGAGTGTTCGTTTTGAAAATTGAGATCT             ]
[+] EMBL C74139               [                                                                                                                                                                             ACGGGCGCNAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACCGCGAGTGGCACCGGCCGCTCCGCAC GCTCGACCCCACCCAGGACCAGAAAGCTCATGTTC GGCCTCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU101397             [                                                                                                                                                                                                                                          GCGAGTGGCACCGGCCGTTCCGNACGGCTCGACCCCACCCAGGACCAG AAGCTCATGTTCGGGCCTCCTCTTCTCCCTCCG TCTTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGGGGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACATA CAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCA AGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGTTGTA AAAAATCCTTTGTACGCTCCTGGCACACCAATCAA   GTGCGAGCTTTTCAATAAGCA CCTTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCA GTGTGCTATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATCACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCTGTTGAACTGCACAAAGTTGTTGATGTTGAGTGTTCGTTTTGAAAATTGAGATCTAAAAAAAAAAAAA]
[+] EMBL BI794897             [                                                                                                                                                                                                                                                                                                                                                                                                GCCAGGGTTGCTCCTTTTACAGCTTCCAGAC CACACATACCGAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCACAGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACCACCTATATGTGGAATATGTTGTA AAAAATCCTTTGTACGCTCCTGGCACACCCATCAA   GTGCGAGCTTTTCAATAAGCC CCTTGATCCATATGTCCAAACCTTGATATGATACCTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCA GTGTGCTATTTGATTTATTACTACCTTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATCACCAACCTTCCCTTGTTCCTGTTGTACCTTGAACCATGCTGCATTACATCTGTTGAACTGCACCAAGTTGTTGATGTTGAGTGTTCGTTTTGGAAAaaaaaaa               ]
[+] EMBL BI794899             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       TAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCACAGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACCACCTATATGTGGAATATGTTGTATAAAAATCCTTTGTACGCTCCTGGCACACCCATCAA   GTGCGAGCTTTTCAATAAGCACCCTTGATCCATATGTCCAAACCTTGATATGATACCTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCACGTGTGCTATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATCACCAACCTTCCCTTGTTCCTGTTGTACCTTGAACCATGCTGCCTTACATCTGTTGAACTGCACCAAGTTGTTGATGTTGAGTGTTCGTTTTGGAAAaaaaaaa               ]




>consensus_11070#0
ACCTCCCGTGAGAGATCTCCTCTTGTGCGGGCGGAGATCCACAGCCGGCGGGCTCGACCT
CCTCCTCGGGCGCCATCCACGCGCGCGCGATGTTCTCCTTCGGCGGCGGGTCGTCGCTGA
CGTCGGTGGTGCCGGACGCGACCCCGGCCCCGGCGGCGCCGCCGGGCACCGGGACGGGCG
CCAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACCGCGAGT
GGCACCGGCCGCTCCGCACGCTCGACCCCACCCAGGACCAGAAGCTCATGTTCGGCCTCC
TCTTCTCCCTCCGCTCCTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGGGGAATC
TTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACAT
ACAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCAA
GGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGTTG
TAAAAAATCCTTTGTACGCTCCTGGCACACCAATCAAGTGCGAGCTTTTCAATAAGCACC
TTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATAC
GGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCAGTGTGCTATTTG
ATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATC
ACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCTGTTGAACTG
CACAAAGTTGTTGATGTTGAGTGTTCGTTTTGAAAATTGAGATCTAAAAAAAAAAAAA

consensusID : consensus_11070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [CGGCCCGGCGGCCCGCCGGGGCACNAGGACGGCCCAACGCNCANGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTTACCGCNANTTGGCACCGGGCCGCTCCCGCAACGCTCGAANCCCACCCAAAGAACAANAAAACTCATNTTTCCGGCCTTCCTCTTCCTCCCTCCGGTTCCTTTCAACCGGCCAAANANTCNAATCCCNACNACNTTTCTTAANGCCNTCTTTNCTNNNCCCCCCNACTTNNAAAAAAAATTCCTTTGGANTTCAAAACCCCTNNNTGGGTTTNGGGAAATGGNNATNACCTTAACCTCTTNGGTTCCCNNCCTCCCAAANTTTNCCCC]

[+] EMBL BE228750             [CGGCCCGGCGGCCCGCCGGGGCACNAGGACGGCCCAACGCNCANGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTTACCGCNANTTGGCACCGGGCCGCTCCCGCAACGCTCGAANCCCACCCAAAGAACAANAAAACTCATNTTTCCGGCCTTCCTCTTCCTCCCTCCGGTTCCTTTCAACCGGCCAAANANTCNAATCCCNACNACNTTTCTTAANGCCNTCTTTNCTNNNCCCCCCNACTTNNAAAAAAAATTCCTTTGGANTTCAAAACCCCTNNNTGGGTTTNGGGAAATGGNNATNACCTTAACCTCTTNGGTTCCCNNCCTCCCAAANTTTNCCCC]




>consensus_11070#1
CGGCCCGGCGGCCCGCCGGGGCACNAGGACGGCCCAACGCNCANGTGCTCTACGTCTTCA
ACCGCGGCGGCGTCTGCCTGCTGTTACCGCNANTTGGCACCGGGCCGCTCCCGCAACGCT
CGAANCCCACCCAAAGAACAANAAAACTCATNTTTCCGGCCTTCCTCTTCCTCCCTCCGG
TTCCTTTCAACCGGCCAAANANTCNAATCCCNACNACNTTTCTTAANGCCNTCTTTNCTN
NNCCCCCCNACTTNNAAAAAAAATTCCTTTGGANTTCAAAACCCCTNNNTGGGTTTNGGG
AAATGGNNATNACCTTAACCTCTTNGGTTCCCNNCCTCCCAAANTTTNCCCC

consensusID : consensus_11070#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [AGAGGCCGAGCCAAGGGGATCCTTTTAGGGGTTATCCCGTTCCTAAATACGGTTAATGTCATATTTTTTGGGTAACTTGGGTACGCTTACTGGTACCAGTGTGCTATTTGATTTATTCCTCCCTTAAGAGGTTTAGTGTTCCTTGAGGAATATGTTAAGACTTTTCTTTCCCAACCATTCCCTTGTTCCTGTTGTCCATTGACCAATGCTGCATTCCATCTGTTGAACTGCCCAAAGTTGTTGATGTTGAGTGTTCGTTTTGGAAATTGGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760863             [AGAGGCCGAGCCAAGGGGATCCTTTTAGGGGTTATCCCGTTCCTAAATACGGTTAATGTCATATTTTTTGGGTAACTTGGGTACGCTTACTGGTACCAGTGTGCTATTTGATTTATTCCTCCCTTAAGAGGTTTAGTGTTCCTTGAGGAATATGTTAAGACTTTTCTTTCCCAACCATTCCCTTGTTCCTGTTGTCCATTGACCAATGCTGCATTCCATCTGTTGAACTGCCCAAAGTTGTTGATGTTGAGTGTTCGTTTTGGAAATTGGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11070#2
AGAGGCCGAGCCAAGGGGATCCTTTTAGGGGTTATCCCGTTCCTAAATACGGTTAATGTC
ATATTTTTTGGGTAACTTGGGTACGCTTACTGGTACCAGTGTGCTATTTGATTTATTCCT
CCCTTAAGAGGTTTAGTGTTCCTTGAGGAATATGTTAAGACTTTTCTTTCCCAACCATTC
CCTTGTTCCTGTTGTCCATTGACCAATGCTGCATTCCATCTGTTGAACTGCCCAAAGTTG
TTGATGTTGAGTGTTCGTTTTGGAAATTGGGATTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11070#0      ACCTCCCGTGAGAGATCTCCTCTTGTGCGGGCGGAGATCCACAGCCGGCGGGCTCGACCT 60
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      CCTCCTCGGGCGCCATCCACGCGCGCGCGATGTTCTCCTTCGGCGGCGGGTCGTCGCTGA 120
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      CGTCGGTGGTGCCGGACGCGACCCCGGCCCCGGCGGCGCCGCCGGGCACCGGGACGGGCG 180
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      CCAACGCGCAGGTGCTCTACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTACCGCGAGT 240
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      GGCACCGGCCGCTCCGCACGCTCGACCCCACCCAGGACCAGAAGCTCATGTTCGGCCTCC 300
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      TCTTCTCCCTCCGCTCCTTCACCGCCAAGATCGATCCCACCACAGCAGAAAAGGGGAATC 360
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      TTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACAT 420
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      ACAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAGCTTATTCTAATTACACATCCAA 480
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      GGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGTTG 540
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      TAAAAAATCCTTTGTACGCTCCTGGCACACCAATCAAGTGCGAGCTTTTCAATAAGCACC 600
consensus_11070#2      ------------------------------------------------------------
consensus_11070#1      ------------------------------------------------------------
                                                                                   

consensus_11070#0      TTGATCAATATGTCAAAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATAC 660
consensus_11070#2      -------AGAGGCCGAGCCAAGGG---GATCCTTTTAGGGGTTATCCCGTTCCTAAATAC 50
consensus_11070#1      -------------CGGCCCGGCGG-----CCCGCCGGGGCACNAGGACGGCCCAACGCNC 42
                                    *    *   *        *     *     *   **  ** *    *

consensus_11070#0      GGTTAATGTCATATCTTCTGGGTAACTTTGGTACGCTTACTGGTATCAGTGTGCTATTTG 720
consensus_11070#2      GGTTAATGTCATATTTTTTGGGTAACTTGGGTACGCTTACTGGTACCAGTGTGCTATTTG 110
consensus_11070#1      ANGTGCTCT-ACGTCTTCAACCGCGGCGGCGTCTGCCTGCTGTTACC-----GCNANTTG 96
                          *  * * *  * **             **  ** * *** ** *     ** * ***

consensus_11070#0      ATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTTCTATC 780
consensus_11070#2      ATTTATTCCTCCCTTAAGAGGTTTAGTGTTCCTTGAGGAATATGTTAAGACTTTTCTTTC 170
consensus_11070#1      GCACCGGGCCGCTCCCGCAACGCTCGAANCCCACCCAAAGAACAANAAAACTCATNTTTC 156
                               *  *      *    * *    **      *  *    ** ***  * * **

consensus_11070#0      ACAAACATTCCCTTGTTCCTGTTGTACATT--GAACAATGCTGCATTACA---TCTGTTG 835
consensus_11070#2      CCAACCATTCCCTTGTTCCTGTTGTCCATT--GACCAATGCTGCATTCCA---TCTGTTG 225
consensus_11070#1      CGGCCTTCCTCTTCCTCCCTCCGGTTCCTTTCAACCGGCCAAANANTCNAATCCCNACNA 216
                                 * *  * ***   ** * **   * *        * *  *    *     

consensus_11070#0      AACTGCACAAAGTTGTTGATGTTGAGTGTTCGT--TTTGAAAA--------TTGAGATCT 885
consensus_11070#2      AACTGCCCAAAGTTGTTGATGTTGAGTGTTCGT--TTTGGAAA--------TTGGGATTT 275
consensus_11070#1      CNTTTCTTAANGCCNTCTTTNCTNNNCCCCCCNACTTNNAAAAAAAATTCCTTTGGANTT 276
                          * *  ** *   *   *  *       *    **   ***        **  **  *

consensus_11070#0      AAAAAAAAAAAAA----------------------------------------------- 898
consensus_11070#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 308
consensus_11070#1      CAAAACCCCTNNNTGGGTTTNGGGAAATGGNNATNACCTTAACCTCTTNGGTTCCCNNCC 336
                        ****                                                       

consensus_11070#0      ----------------
consensus_11070#2      ----------------
consensus_11070#1      TCCCAAANTTTNCCCC 352