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Oryza sativa
cluster # 11110 cluster # 11110       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11110#0 length = 2148 sequences # 6  
 consensus_11110#1 length = 816 sequences # 1  
consensus_11110#2 length = 186 sequences # 1  
consensusID : consensus_11110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2148
fasta sequence 
                              [CGTCACCTCAGTACCTCACCTCATCTCATCCATCGTTTGCTCCGTTTCTGTGGGATTTCCACCGGCTGATTCTCTCGCCCTCCTCCCATAAAGCGACCGGTGGTTCGCACCGGACGGATGCCCCAATCTTTGCATCGAGGGGCAACGAAGCGAGGTCACGGATGCGGGCGATGCCACCGCCGTCTTCTTGTCCCTAGATCCATCAAGTGACCAGTTCTCTGATCAGTGAGAATAATGGCCGCTGCTGAAGCAAGGGCTGCTTGGCAGCGTGCTGCAAACCGTTGCATCGTTCAGGAGGATAGAAAAAGAGCACCAAAACTAGCCTGCTGTCCACCATCATCAGAACAGCAGCATGTCAAAAGCAATGGAAATTGTAGGAATTCTGAAGACCGCCCTGTGCCCAATTTCATGCCATTGAGCTGGAATCCCATGAACTCCAGTCTGCCACCTGATATTAGATGGTGGCTTCAGTTACAACCAAATTTAGGAGGGCAGAAGAATCTTGCAGGTGAGCACCTATATTTTCTGGGAAGAGAGATCAGTGATAAGGAAGTGGAGGATTCAGCACAAAAGAATATACACGACGAACCATTATTTTGTGAAATGTTCGACACCAATCCTGAGAAGATTGAGGATGTTTTTGAGCCTTCGTGGATGGTTTCCACAGCTTCCATGAAGTATTCTTCTGAAACAGGCTTACAAGACTTGAAAAATATAGGTGGCTATTCCCAAGTTCCTTCGAAGTGCAAAGAAAATGCCAGTGACTGTTTGTTCAATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGGCAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGTGATGCACAAGATTTTTCTAGGGGCATCAATACAGAACCACGAGGCAAGCG-ACATACCAGAATCCTGCAGAGCAAGCTCAACTTTTGGAGGCACTTTGTCACTCGCAAACACGGGCGAGGGAAGCTGAGATGGCTGGGAAGAAAGCACAAAGTGAAAAAGACGATGTCATCAAGCTATTTTTCAGACAGGCCTCGCATCTCTTTGCGTGCAAACAATGGCTGAAAATGTTACAGTTGGAGAACATCTGCCTCCAGCTTAAACACAGAGAGCATCAGATAGCAACCATGATACCTGATATTCCATGGATTACACTAAAGAAAAGGACTACACCAGATCATGAGAAAGAAGATTGGACAAGGAAGAAAGGCAGAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTTGCCGTTGGTTTAGGTCTTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAAGTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCGCCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGATGGCGAAATTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGAATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGTGAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCAACAGTACTCCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTGTTTTTGGGACGGAGGGAGTATCTCCACCTGTACCTATTATTTGGAAAATTAGCAGCGTTACTGCAAAAAAAAAAAAAAAAA]

[+] EMBL AK067617             [CGTCACCTCAGTACCTCACCTCATCTCATCCATCGTTTGCTCCGTTTCTGTGGGATTTCCACCGGCTGATTCTCTCGCCCTCCTCCCATAAAGCGACCGGTGGTTCGCACCGGACGGATGCCCCAATCTTTGCATCGAGGGGCAACGAAGCGAGGTCACGGATGCGGGCGATGCCACCGCCGTCTTCTTGTCCCTAGATCCATCAAGTGACCAGTTCTCTGATCAGTGAGAATAATGGCCGCTGCTGAAGCAAGGGCTGCTTGGCAGCGTGCTGCAAACCGTTGCATCGTTCAGGAGGATAGAAAAAGAGCACCAAAACTAGCCTGCTGTCCACCATCATCAGAACAGCAGCATGTCAAAAGCAATGGAAATTGTAGGAATTCTGAAGACCGCCCTGTGCCCAATTTCATGCCATTGAGCTGGAATCCCATGAACTCCAGTCTGCCACCTGATATTAGATGGTGGCTTCAGTTACAACCAAATTTAGGAGGGCAGAAGAATCTTGCAGGTGAGCACCTATATTTTCTGGGAAGAGAGATCAGTGATAAGGAAGTGGAGGATTCAGCACAAAAGAATATACACGACGAACCATTATTTTGTGAAATGTTCGACACCAATCCTGAGAAGATTGAGGATGTTTTTGAGCCTTCGTGGATGGTTTCCACAGCTTCCATGAAGTATTCTTCTGAAACAGGCTTACAAGACTTGAAAAATATAGGTGGCTATTCCCAAGTTCCTTCGAAGTGCAAAGAAAATGCCAGTGACTGTTTGTTCAATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGGCAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGTGATGCACAAGATTTTTCTAGGGGCATCAATACAGAACCACGAGGCAAGCGAACATACCAGAATCCTGCAGAGCAAGCTCAACTTTTGGAGGCACTTTGTCACTCGCAAACACGGGCGAGGGAAGCTGAGATGGCTGGGAAGAAAGCACAAAGTGAAAAAGACGATGTCATCAAGCTATTTTTCAGACAGGCCTCGCATCTCTTTGCGTGCAAACAATGGCTGAAAATGTTACAGTTGGAGAACATCTGCCTCCAGCTTAAACACAGAGAGCATCAGATAGCAACCATGATACCTGATATTCCATGGATTACACTAAAGAAAAGGACTACACCAGATCATGAGAAAGAAGATTGGACAAGGAAGAAAGGCAGAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTTGCCGTTGGTTTAGGTCTTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAAGTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCGCCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGATGGCGAAATTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGAATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGTGAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCAACAGTACTCCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTGTTTTTGGGACGGAGGGAGTATCTCCACCTGTACC                                               ]
[+] EMBL CA765343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                caagggGTTACAACCAAATTTAGGAGGGCAGAAGAATCTTGCAGGTGAGCACCTATATTTTCTGGGAAGAGAGATCAGTGATAAGGAAGTGGAGGATTCAGCACAAAAGAATATACACGACGAACCATTATTTTGTGAAATGTTCGACACCAATCCTGAGAAGATTGAGGATGTTTTTGAGCCTTCATGGATGGTTTCCACAGCTTCCATGAAGTATTCTTCTGAAACAGGCTTACAAGACTTGAAAAATATAGGTGGCTATTCCCAAGTTCCTTCGAAGTGCAACGAAAATGCCAGTGACTGTTTGTTCAATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCGACCATGGTGGCAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGATACTAGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAGGAAATGNTGCACGCAGTGATGTACTAGATTTTTCTAGGGGCATCAATACAGAACCACGAGGCAAGCG ACATACCAGAATNCTGCANAGCAAGCTCAACTTTTGGAGGCACTTTGTCACTCGC AACAC GGCCAAGGAAGCTGAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSS13495A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCAGATCACTGATGAGAATNAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGTATTGCACAAGATTTTTCTAGGGGCATCAATACAGAACCACGAGGCAAGCG ACATACCAGAATCCTGCAGAGCAAGCTC ACTTTTNGNGGC CTTTGTCACTNGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB679870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAAGCACAAAGTGAAAAAGACGATGTCATCAAGCTATTTTTCAGACAGGCCTCGCATCTCTTTGCGTGCAAACAATGGCTGAAAATGTTACAGTTGGAGAACATCTGCCTCCAGCTTAAACACAGAGAGCATCAGATAGCAACCATGATACCTGATATTCCATGGATTACACTAAAGAAAAGGACTACACCAGATCATGAGAAAGAAGATTGGACAAGGAAGAAAGGCAGAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTTGCCGTTGGTTTAGGTCTTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAAGTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCGCCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGATGGCGAAATTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGAATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGTGAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCAACAGTACTCCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTGTTTTTGGGACGGAGGGAGTATCTCCCCCTGTACCTATTATTTGGAAAATTAGCAG                          ]
[+] EMBL AU032682             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                acCCATGATCCCTGATATCCCATGGATTACACTAAAGAAAAGGAC ACACCAGATCATGAGAAAGNAGATTGGACAAGGANGAAAGGCAGAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTTGCCGTTGGTTTAGGTCTTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAAGTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCNCCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGATGGCGAAATTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGAATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGTGAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCAACAGTACTCCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTGTTTTTGGGACGGAGGGAGTATCTCCACCTGTACCTATTATTTGGAAAATTAGCAGCGTTACTGCAAAAAAAAAAAAAAAAA]
[+] EMBL BI796090             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGAGAAAGAAGATTGGACAAGGAAGAAA GCAGAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTT CCGTTGGTTTAGGTCTTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAAGTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCGCCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGATGGCGAAATTTTAGACCCCAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGAATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGTGAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCcaaaaaa                                                                                                                                                                          ]




>consensus_11110#0
CGTCACCTCAGTACCTCACCTCATCTCATCCATCGTTTGCTCCGTTTCTGTGGGATTTCC
ACCGGCTGATTCTCTCGCCCTCCTCCCATAAAGCGACCGGTGGTTCGCACCGGACGGATG
CCCCAATCTTTGCATCGAGGGGCAACGAAGCGAGGTCACGGATGCGGGCGATGCCACCGC
CGTCTTCTTGTCCCTAGATCCATCAAGTGACCAGTTCTCTGATCAGTGAGAATAATGGCC
GCTGCTGAAGCAAGGGCTGCTTGGCAGCGTGCTGCAAACCGTTGCATCGTTCAGGAGGAT
AGAAAAAGAGCACCAAAACTAGCCTGCTGTCCACCATCATCAGAACAGCAGCATGTCAAA
AGCAATGGAAATTGTAGGAATTCTGAAGACCGCCCTGTGCCCAATTTCATGCCATTGAGC
TGGAATCCCATGAACTCCAGTCTGCCACCTGATATTAGATGGTGGCTTCAGTTACAACCA
AATTTAGGAGGGCAGAAGAATCTTGCAGGTGAGCACCTATATTTTCTGGGAAGAGAGATC
AGTGATAAGGAAGTGGAGGATTCAGCACAAAAGAATATACACGACGAACCATTATTTTGT
GAAATGTTCGACACCAATCCTGAGAAGATTGAGGATGTTTTTGAGCCTTCGTGGATGGTT
TCCACAGCTTCCATGAAGTATTCTTCTGAAACAGGCTTACAAGACTTGAAAAATATAGGT
GGCTATTCCCAAGTTCCTTCGAAGTGCAAAGAAAATGCCAGTGACTGTTTGTTCAATGAT
AAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGAC
GATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGGCAGATC
ACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAAT
TGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCAT
GAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGAT
ACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGAT
TTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGTGATGCACAA
GATTTTTCTAGGGGCATCAATACAGAACCACGAGGCAAGCGACATACCAGAATCCTGCAG
AGCAAGCTCAACTTTTGGAGGCACTTTGTCACTCGCAAACACGGGCGAGGGAAGCTGAGA
TGGCTGGGAAGAAAGCACAAAGTGAAAAAGACGATGTCATCAAGCTATTTTTCAGACAGG
CCTCGCATCTCTTTGCGTGCAAACAATGGCTGAAAATGTTACAGTTGGAGAACATCTGCC
TCCAGCTTAAACACAGAGAGCATCAGATAGCAACCATGATACCTGATATTCCATGGATTA
CACTAAAGAAAAGGACTACACCAGATCATGAGAAAGAAGATTGGACAAGGAAGAAAGGCA
GAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTTGCCGTTGGTTTAGGTC
TTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAA
GTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCG
CCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGAT
GGCGAAATTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGA
ATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGT
GAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCAACAGTACT
CCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCT
AGGTTGATCTCCAGGTTGATGTATGTGTTTTTGGGACGGAGGGAGTATCTCCACCTGTAC
CTATTATTTGGAAAATTAGCAGCGTTACTGCAAAAAAAAAAAAAAAAA

consensusID : consensus_11110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 816
fasta sequence 
                              [AGTGCACTGTTTGTTCAATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGGCAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGGTGTGTATTTCTTCTGCCTTACTCTGTCACCAATTTACCCTGATGCCATAATTGTAATTTCCGTAAGCATACCTAAATTTTGATGCACATCTATTTTAATTTCCTAGTTGATATCTGAAGTTCAGGTGGTGCATTACTTCTGTATTACAAATAGAATTGCTAAATATTACTGTAGTCTGAATTATTTGGTGCTAAGTAGGAGTTTCCCTTTGTGTTCGCTAAAATGCTGTTTGGTGCTAGTGAGATCTTTTGTCTGTTCCTGTTCAGTTCTCTTTTTGAAAGGAAAACTTATTATACTGGTTAAGTTTCAGTTTTGGTTCATTTCAGAGATACATTGTTGCTCACTGCCTACAGGATAATGGTGCCATTGCCCTTGTTTGCAAA]

[+] EMBL CB679869             [AGTGCACTGTTTGTTCAATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGGCAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGGTGTGTATTTCTTCTGCCTTACTCTGTCACCAATTTACCCTGATGCCATAATTGTAATTTCCGTAAGCATACCTAAATTTTGATGCACATCTATTTTAATTTCCTAGTTGATATCTGAAGTTCAGGTGGTGCATTACTTCTGTATTACAAATAGAATTGCTAAATATTACTGTAGTCTGAATTATTTGGTGCTAAGTAGGAGTTTCCCTTTGTGTTCGCTAAAATGCTGTTTGGTGCTAGTGAGATCTTTTGTCTGTTCCTGTTCAGTTCTCTTTTTGAAAGGAAAACTTATTATACTGGTTAAGTTTCAGTTTTGGTTCATTTCAGAGATACATTGTTGCTCACTGCCTACAGGATAATGGTGCCATTGCCCTTGTTTGCAAA]




>consensus_11110#1
AGTGCACTGTTTGTTCAATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACC
GTCGAAGAACCCACAGAAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAG
GAGTCAACCATGGTGGCAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAG
AGCAATGCAGCATATTGAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCA
GGGTACTGAATCACGCAGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGC
AGGTACAATGTCATATCCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCAC
AGCAAGCACAGATGAGGTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAA
TGTTGCACGCAGGTGTGTATTTCTTCTGCCTTACTCTGTCACCAATTTACCCTGATGCCA
TAATTGTAATTTCCGTAAGCATACCTAAATTTTGATGCACATCTATTTTAATTTCCTAGT
TGATATCTGAAGTTCAGGTGGTGCATTACTTCTGTATTACAAATAGAATTGCTAAATATT
ACTGTAGTCTGAATTATTTGGTGCTAAGTAGGAGTTTCCCTTTGTGTTCGCTAAAATGCT
GTTTGGTGCTAGTGAGATCTTTTGTCTGTTCCTGTTCAGTTCTCTTTTTGAAAGGAAAAC
TTATTATACTGGTTAAGTTTCAGTTTTGGTTCATTTCAGAGATACATTGTTGCTCACTGC
CTACAGGATAATGGTGCCATTGCCCTTGTTTGCAAA

consensusID : consensus_11110#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence 
                              [AGGGGATGTNATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTTTTTTTGGGACGGAGGGAGTATCTCCACCTGTACCTATNATTTGGAAAATNAGCAGCGTTACTGCAGATTGTTTTTTTNAAAACAGGGAACTACCAAGCGGCAGTTCTGTCTGTTTTTNAGTGAATTGCAGGTTATGTGTT]

[+] EMBL AU069728             [AGGGGATGTNATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTTTTTTTGGGACGGAGGGAGTATCTCCACCTGTACCTATNATTTGGAAAATNAGCAGCGTTACTGCAGATTGTTTTTTTNAAAACAGGGAACTACCAAGCGGCAGTTCTGTCTGTTTTTNAGTGAATTGCAGGTTATGTGTT]




>consensus_11110#2
AGGGGATGTNATCTCTCCTAGGTTGATCTCCAGGTTGATGTATGTTTTTTTGGGACGGAG
GGAGTATCTCCACCTGTACCTATNATTTGGAAAATNAGCAGCGTTACTGCAGATTGTTTT
TTTNAAAACAGGGAACTACCAAGCGGCAGTTCTGTCTGTTTTTNAGTGAATTGCAGGTTA
TGTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11110#0      CGTCACCTCAGTACCTCACCTCATCTCATCCATCGTTTGCTCCGTTTCTGTGGGATTTCC 60
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      ACCGGCTGATTCTCTCGCCCTCCTCCCATAAAGCGACCGGTGGTTCGCACCGGACGGATG 120
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      CCCCAATCTTTGCATCGAGGGGCAACGAAGCGAGGTCACGGATGCGGGCGATGCCACCGC 180
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      CGTCTTCTTGTCCCTAGATCCATCAAGTGACCAGTTCTCTGATCAGTGAGAATAATGGCC 240
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      GCTGCTGAAGCAAGGGCTGCTTGGCAGCGTGCTGCAAACCGTTGCATCGTTCAGGAGGAT 300
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      AGAAAAAGAGCACCAAAACTAGCCTGCTGTCCACCATCATCAGAACAGCAGCATGTCAAA 360
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      AGCAATGGAAATTGTAGGAATTCTGAAGACCGCCCTGTGCCCAATTTCATGCCATTGAGC 420
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      TGGAATCCCATGAACTCCAGTCTGCCACCTGATATTAGATGGTGGCTTCAGTTACAACCA 480
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      AATTTAGGAGGGCAGAAGAATCTTGCAGGTGAGCACCTATATTTTCTGGGAAGAGAGATC 540
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      AGTGATAAGGAAGTGGAGGATTCAGCACAAAAGAATATACACGACGAACCATTATTTTGT 600
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      GAAATGTTCGACACCAATCCTGAGAAGATTGAGGATGTTTTTGAGCCTTCGTGGATGGTT 660
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      TCCACAGCTTCCATGAAGTATTCTTCTGAAACAGGCTTACAAGACTTGAAAAATATAGGT 720
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      GGCTATTCCCAAGTTCCTTCGAAGTGCAAAGAAAATGCCAGTGACTGTTTGTTCAATGAT 780
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      AAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAGAAGGAC 840
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      GATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGGCAGATC 900
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      ACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATTGAGAAT 960
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      TGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGCAGTCAT 1020
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      GAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATATCCTGAT 1080
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      ACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAGGTGGAT 1140
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      TTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGTGATGCACAA 1200
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      GATTTTTCTAGGGGCATCAATACAGAACCACGAGGCAAGCGACATACCAGAATCCTGCAG 1260
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      AGCAAGCTCAACTTTTGGAGGCACTTTGTCACTCGCAAACACGGGCGAGGGAAGCTGAGA 1320
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      TGGCTGGGAAGAAAGCACAAAGTGAAAAAGACGATGTCATCAAGCTATTTTTCAGACAGG 1380
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      CCTCGCATCTCTTTGCGTGCAAACAATGGCTGAAAATGTTACAGTTGGAGAACATCTGCC 1440
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      TCCAGCTTAAACACAGAGAGCATCAGATAGCAACCATGATACCTGATATTCCATGGATTA 1500
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      ------------------------------------------------------------
                                                                                   

consensus_11110#0      CACTAAAGAAAAGGACTACACCAGATCATGAGAAAGAAGATTGGACAAGGAAGAAAGGCA 1560
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      --------------------------------------------AGTGCACTGTTTGTTC 16
                                                                                   

consensus_11110#0      GAAGGCATAAAAATGCAGGGAGTTTCTGTGACGCGCTCTTATTTGCCGTTGGTTTAGGTC 1620
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      AATGATAAAGAATTCCTGGATTTCAAAAATTTTAACCCACCACCGTCGAAGAACCCACAG 76
                                                                                   

consensus_11110#0      TTGCAGGTGCAGGGCTGCTTCTTGGCTGGACATTTGGGTGGCTTCTGGCCAAGTTCTGAA 1680
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      AAGGACGATTTTGATATGAATGCGCCTTGGAAAGGAGGTGAAAGGAGTCAACCATGGTGG 136
                                                                                   

consensus_11110#0      GTTGCCCATAGTTTTCAACTGAGACTAGCTTAGCTAGCTAGGCATGTATTTTGCTGTGCG 1740
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      CAGATCACTGATGAGAATGAGCTGGCTTTACTGGTTGCAGAAAGAGCAATGCAGCATATT 196
                                                                                   

consensus_11110#0      CCTGTATGTGATGATTCATAGATGAAATCTCCAGGTATACTCTCCATATTGGAGTGAGAT 1800
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      GAGAATTGCGATTTACCAAGACCTACCCAGATAGTTCGTGTTCAGGGTACTGAATCACGC 256
                                                                                   

consensus_11110#0      GGCGAAATTTTAGACCCAAGAATATGTTCGTTTGGAAGCTCTGCTAGTTAGAAGACACGA 1860
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      AGTCATGAAAATATGGGTAGGTACAGGGGGTCATCAGGTCCAGCAGGTACAATGTCATAT 316
                                                                                   

consensus_11110#0      ATGTATAGGGAGCATTTGTTGCAAATTTGCAATTTGTAAATATGGGAGGAGGACGTCTGT 1920
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      CCTGATACTGGACAATGTGAACATATTGAATGCAGTTACAGCACAGCAAGCACAGATGAG 376
                                                                                   

consensus_11110#0      GAATGCTTGTACATACTGATCAGTAGAGAAAAAATGTCATCGGACTTCTTCAACAGTACT 1980
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      GTGGATTTAACCAGTGATGGAGTTTGGCAACAGCAGGAAAGAAATGTTGCACGCAGGTGT 436
                                                                                   

consensus_11110#0      CCCTCCGTCCCAAAAAGAATTAAGAGGGGATAAGAATTAAGAGGGGATGTGATCTCTCCT 2040
consensus_11110#2      -----------------------------------------AGGGGATGTNATCTCTCCT 19
consensus_11110#1      GTATTTCTTCTGCCTTACTCTGTCACCAATTTACCCTGATGCCATAATTGTAATTTCCGT 496
                                                                     **   *  *  * *

consensus_11110#0      AGGTTGATCTCCAGGTTGATGTATGTGTTTTTGGGA--CGGAGGGAGTATCTCCACCT-- 2096
consensus_11110#2      AGGTTGATCTCCAGGTTGATGTATGTTTTTTTGGGA--CGGAGGGAGTATCTCCACCT-- 75
consensus_11110#1      AAGCATACCTAAATTTTGATGCACATCTATTTTAATTTCCTAGTTGATATCTGAAGTTCA 556
                       * *   * **  *  ****** *  * * ***      *  **    *****  *  *  

consensus_11110#0      ----GTACCTATTATTTGGAAAATTAGCAGCGTTACTGCAAAAA--------AAAAAAAA 2144
consensus_11110#2      ----GTACCTATNATTTGGAAAATNAGCAGCGTTACTGCAGATTGTTTTTTTNAAAACAG 131
consensus_11110#1      GGTGGTGCATTACTTCTGTATTACAAATAGAATTGCTAAATATTACTGTAGTCTGAATTA 616
                           ** * *    * ** *  *  *  **  ** **  * *             **   

consensus_11110#0      AAAA-------------------------------------------------------- 2148
consensus_11110#2      GGAACTACCAAGCGGCAGTTCTGTCTGTTTTTNAGTGAATTGCAGGTTATGTGTT----- 186
consensus_11110#1      TTTGGTGCTAAGTAGGAGTTTCCCTTTGTGTTCGCTAAAATGCTGTTTG-GTGCTAGTGA 675
                                                                                   

consensus_11110#0      ------------------------------------------------------------
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      GATCTTTTGTCTGTTCCTGTTCAGTTCTCTTTTTGAAAGGAAAACTTATTATACTGGTTA 735
                                                                                   

consensus_11110#0      ------------------------------------------------------------
consensus_11110#2      ------------------------------------------------------------
consensus_11110#1      AGTTTCAGTTTTGGTTCATTTCAGAGATACATTGTTGCTCACTGCCTACAGGATAATGGT 795
                                                                                   

consensus_11110#0      ---------------------
consensus_11110#2      ---------------------
consensus_11110#1      GCCATTGCCCTTGTTTGCAAA 816


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)