cluster # 11154

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Oryza sativa
cluster # 11154 cluster # 11154 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11154#0 length = 743 sequences # 7

consensus_11154#1 length = 640 sequences # 1

consensusID : consensus_11154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 743
fasta sequence

                              [AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGGTTTGCATAAAAAAAAAAAAAA]

[+] EMBL AK059493             [AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGG                     ]
[+] EMBL AU174109             [         TCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTC                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSS2759A             [                 AAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGAAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATC                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA753820             [                               GCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTT                                                                                                            ]
[-] EMBL CA755380             [                               GCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU097187             [                                                                                                                                                                                                                                                                                                 cnctCAAAGG TACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGGTTTGCATAAAAAAAA      ]
[+] EMBL AU174110             [                                                                                                                                                                                                                                                                                                                         ACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTNTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGGTTTGCATAACAAAAAAAAAAA]




>consensus_11154#0
AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTC
ACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTT
CCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGA
GGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTC
CATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGT
TACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGAC
CACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAAC
CACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCA
GATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTC
AAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCC
ATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTG
GTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTT
GGTTTGCATAAAAAAAAAAAAAA

consensusID : consensus_11154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT]

[+] EMBL AK099412             [ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT]




>consensus_11154#1
ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACA
GTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGC
CCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCA
AGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAG
CCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTC
CTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTC
CCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCAT
TCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGAT
ATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTAC
ATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCA
GCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11154#0      ---AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACA 57
consensus_11154#1      ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACA 60
                          *********************************************************

consensus_11154#0      GTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGC 117
consensus_11154#1      GTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGC 120
                       ************************************************************

consensus_11154#0      CTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACC 177
consensus_11154#1      C----------------------------------------------------------- 121
                       *                                                           

consensus_11154#0      AGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACC 237
consensus_11154#1      ---------------------CTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACC 160
                                            ***************************************

consensus_11154#0      TTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAA 297
consensus_11154#1      TTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAA 220
                       ************************************************************

consensus_11154#0      GGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCC 357
consensus_11154#1      GGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCC 280
                       ************************************************************

consensus_11154#0      GACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCC 417
consensus_11154#1      GACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCC 340
                       ************************************************************

consensus_11154#0      AACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTT 477
consensus_11154#1      AACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTT 400
                       ************************************************************

consensus_11154#0      CCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTC 537
consensus_11154#1      CCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTC 460
                       ************************************************************

consensus_11154#0      TTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTT 597
consensus_11154#1      TTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTT 520
                       ************************************************************

consensus_11154#0      GCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCA 657
consensus_11154#1      GCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCA 580
                       ************************************************************

consensus_11154#0      TTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT 717
consensus_11154#1      TTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT 640
                       ************************************************************

consensus_11154#0      CTTGGTTTGCATAAAAAAAAAAAAAA 743
consensus_11154#1      --------------------------