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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 687 fasta sequence
[TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC-A-GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT]
[+] EMBL CA759962 [TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGGGGGAGCGGGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC A GAGACTACATATACAAACTCTGGTGTCAAGCAAAATAATGGAAGAAAAGGGGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAAAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT]
[-] EMBL AU075629 [ tttttttttTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC A GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTNCAAGGTTATAGCCTGG CTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTT ]
[+] EMBL CB630713 [ TTGTATTAGTGGGACTTTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC ACCAGACTACATATACAAACTCTGGTGTCAAGCATAATAATGGAAGAAAAGGCGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT ]
[-] EMBL AU075628 [ GAATGTCATCTTACAA GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTT ]
consensusID : consensus_11157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence
[TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCGCCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG]
[+] EMBL AK099860 [TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCGCCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG]
[+] EMBL CF329069 [ ctgGCCACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG]
consensusID : consensus_11157#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 399 fasta sequence
[TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATC-TTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT]
[+] EMBL CF329070 [TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATC TTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT]
[-] EMBL AU174697 [ ttttttttTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGNGCACTGAGGGTATATCTTTTGATGGTGCGGCTTTGATCTCCTCCAAGGGTATAGCCTGGTCTTGGCCAGCAAAGTCATTG CCGGGGTAANAAAAAACATGCAANGGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11157#0 ----------TTTTTTTTTTTT---------TCAATCGGAAAATATCATACCTTTGATTC 41
consensus_11157#2 TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTC 60
consensus_11157#1 TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCG 60
* * * * * * * * * * *
consensus_11157#0 AAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAG 101
consensus_11157#2 AAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAG 120
consensus_11157#1 CCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCAC 120
* * * * * * * * **** * *** * * *
consensus_11157#0 TGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG 161
consensus_11157#2 TGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG 180
consensus_11157#1 TCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAA--TG 178
* * ** * * * * ** * * *** * * *** **
consensus_11157#0 TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC 221
consensus_11157#2 TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC 240
consensus_11157#1 ATGTCGATGGC---CTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGA 235
*** * * * ** ** * * * * *****
consensus_11157#0 TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA 281
consensus_11157#2 TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA 300
consensus_11157#1 CGCAAATGCACAGTTCGAGTTCAAGCTGGA-GCTGCCGGAGCGGATGCATCT-GATAAGT 293
** ** ** * * * ****** * * ** ** * **** * * *
consensus_11157#0 TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT 341
consensus_11157#2 TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT 360
consensus_11157#1 CGCTCGAGATTATGCGCAAATTCTCT----GAGCAGTACGCCCGCCGC-TCCAACACCTT 348
* ** ** * **** * ** * * * **** ** *
consensus_11157#0 CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGC 401
consensus_11157#2 CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT--------------------- 399
consensus_11157#1 CTTC-----TGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCAC 403
* * * * ** ** * ** * * ** *
consensus_11157#0 AGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAG 461
consensus_11157#2 ------------------------------------------------------------
consensus_11157#1 AAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAG 463
consensus_11157#0 GGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTA 521
consensus_11157#2 ------------------------------------------------------------
consensus_11157#1 GTAGCACAAGG------------------------------------------------- 474
consensus_11157#0 GTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAA 581
consensus_11157#2 ------------------------------------------------------------
consensus_11157#1 ------------------------------------------------------------
consensus_11157#0 GAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACT 641
consensus_11157#2 ------------------------------------------------------------
consensus_11157#1 ------------------------------------------------------------
consensus_11157#0 TCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT 687
consensus_11157#2 ----------------------------------------------
consensus_11157#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||