cluster # 11168

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Oryza sativa
cluster # 11168 cluster # 11168 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11168#0 length = 974 sequences # 5

consensus_11168#1 length = 628 sequences # 1
consensus_11168#2 length = 178 sequences # 2

consensusID : consensus_11168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 974
fasta sequence

                              [TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGAGTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCA-ACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG-AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTAT-GTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACT-GGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCC-AATCTTCCACAAAATATTTGCT-GCACTTGCAAACAACTGCTCATTGTATGATCTTCCATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAGATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAATGATTTCCCCCCTGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCTTGCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAAAACAACCATCCCAAC]

[-] EMBL AU078411             [TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGAGTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCA ACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTATGGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACTGGGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCCNAATCTTCCACAAAATATTTGCTGGCACNTGg                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB644487             [                                                                      GACCTAATTTTTACACGAAAACGAAGGAGTTGCTTACCAAGGGAACATCCGATGCCGATATAATTAAATTCTCACACAGGCAGTAACACCATTTACAAAAAATTTGAATATGCAAATGCAGGGGAGCCACCATCAAAACGATAAATATCATAAAGATCCTCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCGGGCACCATCTATTCAATCAACCATATCAGAAGCCCCATCAGGTTCTCCCATTTCTGAAGCGGCAGCACTTCGTTTTTTGGACCGTTGAAACCTGATAAACTCTTCGATGCGCGACTTGAGCTCGGGATCCGGTATCAACATGTCTTGCGGAAGGGGAGAAACGGGTGAACGGATCACTACTGCCACTTACCAAGGGCCTAACAAAAACGGGACGATCTATTGCCACCCGAGATGATGGAAGTATTACAGGATCCTTCCTCAAAGTATACTGAATTGGATCAAGAAATTCATCTGGAAT GTCACCAAGCATAGCCTCAGCATCCGTTGCCTCAAAAGCAACGATTTTTGACTTACT GGCAAGTTGCAAAAACTCCTGTATGATTTGGGGGTCTCCCCC AATCTTCCACAAAATATTTGGT GCACTTGCAAACAACTGGTAATAGTAT                                                                                                                                                                                                                                                                       ]
[+] EMBL CB643847             [                                                                                           ctttaaAGTT  TTACCAAGTGAACATCCGATGCCGATATAACTTTATTCTCA ACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTAT GTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACT GGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCC AATCTTCCACAAAATATTTGCT GCACTTGCAAACAACTGCTCATTGTATGATCTTCCATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAGATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAAT                                                                                                                             ]
[-] EMBL CA764512             [                                                                                                                 acCATCCAAT CCGATAT ATTAAATTTCCA CCAGNCAGTACCCCCA TTAC AAGAATTTGANTATGCAAATGCAGGGNAGCCAGCATCAAACCGATAANTATCATAANGATCATCTGT CCNCAAAAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGTGAG AACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTAT GTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAAGCAGCAGTTTTTGACTTACT GGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCCCC AATCTTCCACAAAATATTTGCT GCACTTGCAGACAACTGCTCATTGTATGATCTTCCATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAGATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAATGATTTCCCCCCT                                                                                                                 ]
[-] EMBL CB000450             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGTTTCAAGAGCTGATTCGGCTTGAACTCATACTTTTCAGGATCTTTTACAGTCAATGATTTCCTCTGAGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCTTGCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAAAACAACCATCCCAAC]




>consensus_11168#0
TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGA
GTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCC
GATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATAT
GCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAA
AAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC
CCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTG
ATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGG
TGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGA
TCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATT
GGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAA
GCAGCAGTTTTTGACTTACTGGCAAGTTGCATAAACTCCTGTATGATTTGGGGGTCTCCC
CCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGTATGATCTTCCA
TCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATAG
ATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTTT
ACAGTCAATGATTTCCCCCCTGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCTT
GCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAAA
ACAACCATCCCAAC

consensusID : consensus_11168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCTTTTTTTTTTTTTTTTTTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGGTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGGGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAAGCAGCAGTTTTTGACTTAAGCAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCCCCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGG]

[+] EMBL CB619296             [CCTTTTTTTTTTTTTTTTTTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGCATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGGTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGGGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAAGCAGCAGTTTTTGACTTAAGCAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCCCCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGG]




>consensus_11168#1
CCTTTTTTTTTTTTTTTTTTTGCTTACCAAGTGAACATCCGATGCCGATATAATTAAATT
CTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATATGCAAATGCAGGGGAGCCAGC
ATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCCTCCTTCCC
TTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGGTCTCCCATTTC
TGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTGATAAACTCTTCGATGCGCGA
CTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGGGGAGAACGGTTGAACGGATC
AGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGATCTATTGTCACCCGTGATGA
TGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATTGGATCAAGAAATTCATCTGG
TATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAAGCAGCAGTTTTTGACTTAAG
CAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCCCCCAATCTTCCACAAAATATTT
GCTGCACTTGCAAACAACTGCTCATTGG

consensusID : consensus_11168#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 178
fasta sequence

                              [TTTTTTTTTTTTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC]

[+] EMBL CF328715             [TTTTTTTTTTTTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGA ]
[-] EMBL CF328714             [ TTTTTTTTTTTTTNNGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC]




>consensus_11168#2
TTTTTTTTTTTTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATC
TGTCCCACAAAAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCAT
ATCAGCAGCCCCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11168#0      TTTTTTTTTTTTTTTTTTAGCTTTGGTCGATTAGTACTTAATCAAGGATGAGCCTCACGA 60
consensus_11168#1      ------------------------------------------------------------
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      GTCGTTAAACGATCAAATTTTTACACGAGAACGAAGGAGTTGCTTACCAAGTGAACATCC 120
consensus_11168#1      -------------CCTTTTTTTTTTTTTTTTT-------TTGCTTACCAAGTGAACATCC 40
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      GATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATAT 180
consensus_11168#1      GATGCCGATATAATTAAATTCTCAACAGGCAGTAACACCATTTACAAAGAATTTGAATAT 100
consensus_11168#2      --------------------------------------------------TTTTTTTTTT 10
                                                                          ***   * *

consensus_11168#0      GCAAATGCAGGGGAGCCAGCATCAGAACGATAAATATCATAAAGATCATCTGTCCCACAA 240
consensus_11168#1      GCAAATGCAGGGGAGCCAGCATCAAAACGATAAATATCATAAAGATCATCTGTCCCACAA 160
consensus_11168#2      TTTTTTGCAGGGGAGCCAGCGTCAGAACGATAAATATCATAAAGATCATCTGTCCCACAA 70
                            *************** *** ***********************************

consensus_11168#0      AAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC 300
consensus_11168#1      AAAAAATGTTCCTCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC 220
consensus_11168#2      AAAAAATGTTCATCCTTCCCTTCCCTGGCACCATCTATTCAATCAGCCATATCAGCAGCC 130
                       *********** ************************************************

consensus_11168#0      CCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTG 360
consensus_11168#1      CCATCAGGGTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGACCGTTGAGACCTG 280
consensus_11168#2      CCATCAGGTTCTCCCATTTCTGAATCGGCAGCAGTTCGTTTTTTGGAC------------ 178
                       ******** ***************************************            

consensus_11168#0      ATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGG 420
consensus_11168#1      ATAAACTCTTCGATGCGCGACTTGAGCTCTGTATCCGGTATCAACATGTCTTGCGTAAGG 340
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      TGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGA 480
consensus_11168#1      GGAGAACGGTTGAACGGATCAGTACTGTCACTTAGCAAGTGCCTAACAATAACGGGACGA 400
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      TCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATT 540
consensus_11168#1      TCTATTGTCACCCGTGATGATGGTAGTATTACAGGATCCTTCATCAGAGTATACTGAATT 460
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      GGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAGAA 600
consensus_11168#1      GGATCAAGAAATTCATCTGGTATGTCACCAAGCATAGCCTCAGCATCCATTGCCTCAAAA 520
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      GCAGCAGTTTTTGACTTACTGGCAAGTTGCATAAACTCC-TGTATGATTTGGGGGTCTCC 659
consensus_11168#1      GCAGCAGTTTTTGACTTA--AGCAAGTTGCATAACCTCCCTGTATGATTTGGGGGTCTCC 578
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      CCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGTATGATCTTCC 719
consensus_11168#1      CCCAATCTTCCACAAAATATTTGCTGCACTTGCAAACAACTGCTCATTGG---------- 628
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      ATCTTTTGAGATGGCTGCTGGGAATATACCTTCTTTATCACCCCTTGTGATATGGACATA 779
consensus_11168#1      ------------------------------------------------------------
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      GATGGTGGCAATCTGTTTCAAGAGCTGCTTCGGCTTGAACTCATACTTTTCAGGATCTTT 839
consensus_11168#1      ------------------------------------------------------------
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      TACAGTCAATGATTTCCCCCCTGGACCAGCAAGTTGCAAGAGGAAGTAATTTAGCATGCT 899
consensus_11168#1      ------------------------------------------------------------
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      TGCCACCCTTTCCACCATTTCAGGAAGGAGGAAAGGTGCTGAAATCTCCTCTCACCTCAA 959
consensus_11168#1      ------------------------------------------------------------
consensus_11168#2      ------------------------------------------------------------
                                                                                   

consensus_11168#0      AACAACCATCCCAAC 974
consensus_11168#1      ---------------
consensus_11168#2      ---------------