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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1072 fasta sequence
[CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK072623 [CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCA ]
[+] EMBL CB685037 [ CCGCCTCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAGAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGACAGAGAAACTACTAGAATCGATTAAGAAATCAGAGGACCCTAATGCCATTGAA ]
[+] EMBL OS0442A [ TGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAAT ]
[+] EMBL C98042 [ tnCGTGAACATTTTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGNCCATNTTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGNGCTCAAGGAGGCAGGAAAGCTTGATNCCTTCATGGAGAANCGGCGGAGGAAGAACNCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB683534 [ TGAACATGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTACAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTT ]
[+] EMBL CF327209 [ TAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAAaaa ]
[-] EMBL CF327210 [ AATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAAaaaa ]
consensusID : consensus_11190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTCTTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTAAAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATAACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTTGCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATATGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTATATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC]
[+] EMBL CB000574 [AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTCTTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTAAAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATAACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTTGCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATATGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTATATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11190#0 CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTC 60
consensus_11190#1 ------------------------------------------------------------
consensus_11190#0 GACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGG 120
consensus_11190#1 ------------------------------------------------------------
consensus_11190#0 CGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGA 180
consensus_11190#1 ------------------------------------------------------------
consensus_11190#0 GCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGC 240
consensus_11190#1 --------------------------------------------------AGAAATGAAG 10
*
consensus_11190#0 CGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCC-GCCGCGCAGAAGAAGGCTC 299
consensus_11190#1 AGTCGCATCACTTGG--ATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATC 68
* ** ** ** ** * **** * * * * * * * ** **
consensus_11190#0 GCAGGGCGAGCAAGAAAA---GGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGT 356
consensus_11190#1 A-ATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACC--TGC 125
* * *** ** * ** * ** * * * * **** *
consensus_11190#0 TCAGGGAGATCATTCAGGTTCCGA-AGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTA 415
consensus_11190#1 TCAGTGAAA-CTTTCATATACGAAGAAAAAGTCATCAG--ACTTTAGACCCCA--TTTTC 180
**** ** * * **** * * * * ** ** **** ** *** * * *
consensus_11190#0 TATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAA 475
consensus_11190#1 TTGAGTTCTTTTTGTAC---TGGATTTCTGATAGAATATAA----------GACGTTGCA 227
* * ** ** * ** ** ** * *** ** ** * ** *
consensus_11190#0 CTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCC 535
consensus_11190#1 CCTC--------------AGCCTTGTAAAGCCTGTTAAGGAGGCATTG---CCTGTTGT- 269
* ** * ** *** * ***** * ** * *** **
consensus_11190#0 ATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAG 595
consensus_11190#1 GCTGCATGATT--AGATCTGTTTATATTTTATAACTGCTTTGTAGAAGA-TCATAAAAAT 326
** * * * *** * * ** ** * * ** * **** **
consensus_11190#0 AAGAACGTTGA-GTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAA 654
consensus_11190#1 TATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGA 386
* ** ** * *** * * * * * * **** * * *
consensus_11190#0 GACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAA 714
consensus_11190#1 CAGTGGCAAGC---TTCATTTTTTGAAG----TTGCTAGTTGCCACGATAGGATAATCAC 439
* *** **** *** * ***** ** * * * * * * * ** *
consensus_11190#0 CAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAG-AAGCGGCGGA 773
consensus_11190#1 C--TTAGCATGAAACTAAAG---TAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGG 494
* ** **** ** * * **** ** * ** * *** ** **** *
consensus_11190#0 GGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCAT 833
consensus_11190#1 CCAGTACAATTTGATAATCTTACTATTACA-GTGAGAGT-AAGAAATATGCATGATGTAT 552
* * * ** * * **** * * * *** *** *** ** **
consensus_11190#0 AATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCC 893
consensus_11190#1 CATAGGCTTGCATGAGCAATCTTA---TCAGGTTGCTCA--ATCTTTTTGTATATTTAGT 607
** * * *** *** * * *** *** * ** *
consensus_11190#0 TGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTAC 953
consensus_11190#1 TG-ATGCCTTGATGACACATACATCTGCAG------GATAAACAATTGAGGTCTCATC-C 659
** * * * * * * *** * *** * *** * * ** *
consensus_11190#0 TGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCT 1013
consensus_11190#1 TAAGAAGAACGTTGAGTCAGAGATTCTG--CGTGAAC----------------------- 694
* * ** ** ** * * * * ** *
consensus_11190#0 TTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA 1072
consensus_11190#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||