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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2127 fasta sequence
[TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTTGACAAACAGAATTCAATAGATAACGTTTAGTTGTCATCAATATTTTTTTTTTTACATTTGGCTGTTTTCCTTGTTTCCTCCAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGG]
[+] EMBL AK101078 [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTTGACAAACAGAATTCAATAGATAACGTTTAGTTGTCATCAATATTTTTTTTTTTACATTTGGCTGTTTTCCTTGTTTCCTCCAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGG]
consensusID : consensus_11236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2073 fasta sequence
[TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA-TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGGAAGTTTATTTAGAAAAATGAGAACGTGGCTA]
[+] EMBL AK067224 [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGGAAGTTTATTTAGAAAAATGAGAACGTGGCTA]
[+] EMBL AK070919 [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACA ]
[-] EMBL CB648818 [ AACCTTATTGCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCGTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTCGTGTATTACATAAAAGGACTTCTATCTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTCGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGGGAACATCAACCCCCTACCTGGCCCTCATATTTCATGGATATCAACGTGTTGGCCTTCTGGATTCCTGCTGGGATCATTTCATGCTTTTTGCCTTTATGTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCGTGGTGGGTGCATTTTATCTGGAATCGCTCTTTGTGAGGCTTTAGAGGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAAGTTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGTTAGTACTGTCTCCCCAAATTCAGCAAAAAAggga ]
[+] EMBL CB663559 [ TAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCC ]
[-] EMBL CB635991 [ CAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGAAAGTTTATTTAAAAAAAAGA ]
[+] EMBL CA305806 [ ACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAAT AAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGNCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACctcggtc ]
consensusID : consensus_11236#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[GGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTTGATGCTTTGTGGACTTCTTTAGAACAAATCAATAACTAGTGGCCCCAGATCCCTGACGTTGGGTGTTTACTTTACAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCCATT]
[-] EMBL CB663560 [GGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTTGATGCTTTGTGGACTTCTTTAGAACAAATCAATAACTAGTGGCCCCAGATCCCTGACGTTGGGTGTTTACTTTACAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11236#0 TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCA 60
consensus_11236#1 TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCA 60
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 ACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTT 120
consensus_11236#1 ACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTT 120
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 ACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGG 180
consensus_11236#1 ACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGG 180
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCC 240
consensus_11236#1 TTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCC 240
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAG 300
consensus_11236#1 TTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAG 300
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATAC 360
consensus_11236#1 TAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATAC 360
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTAC 420
consensus_11236#1 TCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTAC 420
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAAC 480
consensus_11236#1 TTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAAC 480
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 CCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTG 540
consensus_11236#1 CCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTG 540
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 GGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGG 600
consensus_11236#1 GGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGG 600
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTG 660
consensus_11236#1 TCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTG 660
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 CGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTA 720
consensus_11236#1 CGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTA 720
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 AATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAG 780
consensus_11236#1 AATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAG 780
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 AGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCA--AAAAAATGAGACTAGACCTGAAA 838
consensus_11236#1 AGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAA 840
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 AAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAG 898
consensus_11236#1 AAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAG 900
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 TGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGG 958
consensus_11236#1 TGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGG 960
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 AGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATT 1018
consensus_11236#1 AGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATT 1020
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 GTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGC 1078
consensus_11236#1 GTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGC 1080
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 GTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACA 1138
consensus_11236#1 GTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACA 1140
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 CAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAA--CAACTGCAAT 1196
consensus_11236#1 CAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAA--CAACTGCAAT 1198
consensus_11236#2 ----------------------GGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGA 38
* * * * ** * *** ** **
consensus_11236#0 GGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGT 1256
consensus_11236#1 GGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGT 1258
consensus_11236#2 GATCTTCAATTCTTTAGATGTCAAATATG-TCCTTGTTGTATT----------TGGAGGT 87
* * ** ** ** *** * ** * **** ** * **
consensus_11236#0 TGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAG-ATCTTCAATTCTTTAGATG 1315
consensus_11236#1 TGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAG-ATCTTCAATTCTTTAGATG 1317
consensus_11236#2 TGATGCTTTGTGGACTTCTTTAGAACAAATCAATAACTAGTGGCCCCAGATCCCT-GACG 146
** * * * * *** **** ** * ** * ** ** * ** *
consensus_11236#0 TCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACA 1375
consensus_11236#1 TCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACA 1377
consensus_11236#2 TTGGGTGTTTACTT--------TACAGGTCTTGTTGGCTACCCTAGCGATGATATTAACA 198
* * * * *** * ***********************************
consensus_11236#0 AGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATT 1435
consensus_11236#1 AGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATT 1437
consensus_11236#2 AGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATT 258
************************************************************
consensus_11236#0 ATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCC 1495
consensus_11236#1 ATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCC 1497
consensus_11236#2 ATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCC 318
************************************************************
consensus_11236#0 TCATGTACAAGCTTTGCTATTACAGGTTTGACAAACAGAATTCAATAGATAACGTTTAGT 1555
consensus_11236#1 TCATGTACAAGCTTTGCTATTACAGGTT-------------------------------- 1525
consensus_11236#2 TCATGTACAAGCTTTGCTATTACAGGTT-------------------------------- 346
****************************
consensus_11236#0 TGTCATCAATATTTTTTTTTTTACATTTGGCTGTTTTCCTTGTTTCCTCCAGGTTCGTTG 1615
consensus_11236#1 -------------------------------------------------------CGTTG 1530
consensus_11236#2 -------------------------------------------------------CGTTG 351
*****
consensus_11236#0 AGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCA 1675
consensus_11236#1 AGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCA 1590
consensus_11236#2 AGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCA 411
************************************************************
consensus_11236#0 AACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC 1735
consensus_11236#1 AACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC 1650
consensus_11236#2 AACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC 471
************************************************************
consensus_11236#0 TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAG 1795
consensus_11236#1 TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAG 1710
consensus_11236#2 TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAG 531
************************************************************
consensus_11236#0 CTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATG 1855
consensus_11236#1 CTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATG 1770
consensus_11236#2 CTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATG 591
************************************************************
consensus_11236#0 CGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAA 1915
consensus_11236#1 CGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAA 1830
consensus_11236#2 CGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAA 651
************************************************************
consensus_11236#0 AAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT 1975
consensus_11236#1 AAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT 1890
consensus_11236#2 AAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT 711
************************************************************
consensus_11236#0 GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGC 2035
consensus_11236#1 GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGC 1950
consensus_11236#2 GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGC 771
************************************************************
consensus_11236#0 TCTAAGCTTTTTGGCCCC-ATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTT 2094
consensus_11236#1 TCTAAGCTTTTTGGCCCC-ATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTT 2009
consensus_11236#2 TCTAAGCTTTTTGGCCCCCATT-------------------------------------- 793
****************** ***
consensus_11236#0 TGCACTGAAGATGTTTAGGCGGACGTACAATGG--------------------------- 2127
consensus_11236#1 TGCACTGAAGATGTTTAGGCGGACGTACAATGGAAGTTTATTTAGAAAAATGAGAACGTG 2069
consensus_11236#2 ------------------------------------------------------------
consensus_11236#0 ----
consensus_11236#1 GCTA 2073
consensus_11236#2 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||