cluster # 1124

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Oryza sativa
cluster # 1124 cluster # 1124 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1124#0 length = 524 sequences # 1

consensus_1124#1 length = 452 sequences # 1

consensusID : consensus_1124#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATTCAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTGTCCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA]

[+] EMBL BM419693             [TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATTCAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTGTCCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA]




>consensus_1124#0
TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGA
GCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTGG
GGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGG
AGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGT
CGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGG
GACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAG
CTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATTC
AATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTGT
CCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA

consensusID : consensus_1124#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCATCATTCATGTATGCAGACGATCATCCAGCGATGAAGCTGGTGATGTCAAAAAAAAAA]

[+] EMBL BQ908506             [GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCATCATTCATGTATGCAGACGATCATCCAGCGATGAAGCTGGTGATGTCAAAAAAAAAA]




>consensus_1124#1
GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCA
CCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTGGGGCAGCTGAGGGAGATGG
CCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAG
CAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGG
GACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTG
AGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGT
TCTTCGTGTATGTATATGTACTAGTATAGCAATCATCATTCATGTATGCAGACGATCATC
CAGCGATGAAGCTGGTGATGTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1124#0      TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGA 60
consensus_1124#1      -------------------GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGA 41
                                         *****************************************

consensus_1124#0      GCAGCCGGAGGCAGTGGCAC-TGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTG 119
consensus_1124#1      GCAGCCGGAGGCAGTGGCACCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTG 101
                      ******************** ********************** *    * *********

consensus_1124#0      GGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCG 179
consensus_1124#1      GGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCG 161
                      ************************************************************

consensus_1124#0      GAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCG 239
consensus_1124#1      GAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCG 221
                      ************************************************************

consensus_1124#0      TCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAG 299
consensus_1124#1      TCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAG 281
                      ************************************************************

consensus_1124#0      GGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCA 359
consensus_1124#1      GGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCA 341
                      ************************************************************

consensus_1124#0      GCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATT 419
consensus_1124#1      GCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCA-TCATT 400
                      ****************************************************** *****

consensus_1124#0      CAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTG 479
consensus_1124#1      CA-TGTATGCA-GACGATCA-TCCAGCGATGAAGCTGGTGATGTCAAAAAAAAAA----- 452
                      ** ******** ******** ************************               

consensus_1124#0      TCCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA 524
consensus_1124#1      ---------------------------------------------