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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 714 fasta sequence
[GAAAAAAACGCAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG-GCGCTGCGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTG-CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTTCTGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTATGAC-ACTGCCTTACATCTACA-TTTCTG-GTTTCA-TTTTGAATGCTAGCAT-AACAGTATGGTGTAACA-GGAAATATCAGAAATAA-CGGTGTTACGGAATGAGCCATTTCTGGNTGGCATTATCAGTTTGTACCGAAATAATTGATTGTGTGGACAGTGGTAGTTACATGCTCTGATGGAAATATCAAAAATCATTTGGCCTACAAAAA]
[+] EMBL CB096536 [GAAAAAAACGCAACANCGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGNTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGNCGCAGGGATGCTGCTTGAGGTTNGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTG CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGNTTCTGANTATCTTTTGATTCCCAGACAAANNAAAACTATCCTTTCTAATGTATGACNCCTGCCTTACATCTACATTTTCTGNCTTTCATTTTTGAATGCTAGCATAAACANTANGGNGTAACAGGGAACTATCAGAAACAACCGGTGCNACNGAATGACCCATTTCTGGNTGGCATTATCAGTTTGTACCGAAA ]
[+] EMBL CF314443 [ AACGCAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAAC GNTGGCGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGGTGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTGNCTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAA ]
[+] EMBL CB096479 [ CAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGGGGACACAAAGGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTGCCTCTGAAGAGTTCTCCTTG CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTTCTGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTATGAC ACTGCCTTACATCTACA TTTCTG GTTTCA TTTTGAATGCTAGCAT AACAGTATGGTGTAACA GGAAATATCAGAAATAA CGGTGTTACGGAATGAGCCATTTCT ]
[+] EMBL C26969 [ ACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTNAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAANGCGTCTCCCGAAGAAANTCAGACAAGTTCCTGANTGCTATTTTNTGCCTNGGCGATCTTTGCCTTCTGCATTGGCAATCTATGTGCGCTNCGTGTCCTGCTGGNGTTGGCG ]
[-] EMBL CF314444 [ GCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGGTGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTG CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTTCTGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTATGAC ACTGCCTTACATCTACA TTTCTG GTTTCA TTTTGAATGCTAGCAT AACAGTATGGTGTAACA GGAAATATCAGAAATAA CGGTGTTACGGAATGAGCCATTTCTGTTTGGCATTATCAG TTGTA CGAATTAATTGATTGTGTGGACAGTGGTAGTTACATGCTCTGATGGAAATATCAAAAATCATTTGGCCTACAAAAA]
consensusID : consensus_11261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCAGGGAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGCATTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCAAAGAAAATTAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATATTTGCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGGAGGGGCCATTCAACTCACGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTGGATTATACAATTGAAAACATTACTCTTCTTTTGTCTTAGATAATGTTGGATTGAACAATT]
[+] EMBL AK064179 [CCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCAGGGAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGCATTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCAAAGAAAATTAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATATTTGCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGGAGGGGCCATTCAACTCACGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTGGATTATACAATTGAAAACATTACTCTTCTTTTGTCTTAGATAATGTTGGATTGAACAATT]
consensusID : consensus_11261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[CGTGCCGTCTCCCCGCCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCANGAGGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGTAGTTAGCTAGATCTTGCCTCATTGTGAATTTGTCAATTTGTGCATGTAAGTTTAATTTGTGGTGCCGGTTGTATGTAGTCTGTAGAATCGATTCTAGTGGTGGGNANAACTCGGTAGTTTAATGAATAGC]
[+] EMBL C72651 [CGTGCCGTCTCCCCGCCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCANGAGGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGTAGTTAGCTAGATCTTGCCTCATTGTGAATTTGTCAATTTGTGCATGTAAGTTTAATTTGTGGTGCCGGTTGTATGTAGTCTGTAGAATCGATTCTAGTGGTGGGNANAACTCGGTAGTTTAATGAATAGC]
consensusID : consensus_11261#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence
[GATTCAGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTACGGCACTGCCTTATATCTACATTCCTGATTTCATTTTGAATGCTAGCATTACAGTATGGTGTAACAGGCAGTATCAGAAATAACGGTGTTCCAGAACGAGCCAAAAAAAA]
[+] EMBL AU093368 [GATTCAGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTACGGCACTGCCTTATATCTACATTCCTGATTTCATTTTGAATGCTAGCATTACAGTATGGTGTAACAGGCAGTATCAGAAATAACGGTGTTCCAGAACGAGCCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11261#0 GAAAAAAACGCAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCG 60
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 ------------------------------------------------------------
consensus_11261#2 ------------------------------------------------------------
consensus_11261#0 ACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAA 120
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 ------------------------------------------------------------
consensus_11261#2 ------------------------------------------------------------
consensus_11261#0 GAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGT 180
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 ------------------------------------------------------------
consensus_11261#2 ------------------------------------------------------------
consensus_11261#0 TAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCG 240
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 ------------------------------------------------------------
consensus_11261#2 --------------------------------------------------------CGTG 4
consensus_11261#0 ATCTTTGCCTTCTGCATTGGCAATCTATGGCGCTGCGTGTGCTGCTGGAGTTGGCGCAGG 300
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 -----------CCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGA 49
consensus_11261#2 CCGTCTCCCCGCCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGA 64
consensus_11261#0 GATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGA 360
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 CAAGCCCCCGCAGGGAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCC 109
consensus_11261#2 CAAGCCCCCGCANGAGGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCC 124
consensus_11261#0 AATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTGCTCGTGTTCAGCTGCT 420
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 GTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCT 169
consensus_11261#2 GTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCT 184
consensus_11261#0 AAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTT--CTGATT-ATCTTTTGATTCC 477
consensus_11261#3 ----------------------------------GATT--CAGATT-ATCTTTTGATTCC 23
consensus_11261#1 GAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCC 229
consensus_11261#2 GAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCC 244
* ** * **** * * *** **
consensus_11261#0 CAGACAAAGTAAAACTATCCTTTCTAATGTATGACACTGCCTTACATCTACATTTCTGGT 537
consensus_11261#3 CAGACAAAGTAAAACTATCCTTTCTAATGTACGGCACTGCCTTATATCTACATTCCTGAT 83
consensus_11261#1 CGCAGGCATTTT-CAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTG-GAC 287
consensus_11261#2 CGCAGGTAGTTAGCTAGATCTTGCCTCATTGTG-AATTTGTCAATTTGTGCATGTA-AGT 302
* * * * * **
consensus_11261#0 TTCATTTTGAATGCTAGCATAACA--GTATGGTGTAACAGGA--AATATCAGAAATAA-- 591
consensus_11261#3 TTCATTTTGAATGCTAGCATTACA--GTATGGTGTAACAGGC--AGTATCAGAAATAA-- 137
consensus_11261#1 TGGAAAACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAG 347
consensus_11261#2 TTAATTTGTGGTGCCGGTTGTATGTAGTCTGTAGAATCGATTCTAGTGGTGGGNANAACT 362
* * ** * * * * * * * * **
consensus_11261#0 CGGTGTTACGGAATGAGCCATTTCTGGNTGGCATTATCAGTTTGTACCGAAATAATTGAT 651
consensus_11261#3 CGGTGTTCCAGAACGAGCCAAAAAAAA--------------------------------- 164
consensus_11261#1 CG-TCTCCCAAAGAAAATTAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATATTT 406
consensus_11261#2 CGGTAGTTTAATGAATAGC----------------------------------------- 381
** *
consensus_11261#0 TGTGTGGACAGTGGTAGTTACATGCTCTGATGGAAATATCAAAAATCATTTGGCCTACAA 711
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 GCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGATGCT 466
consensus_11261#2 ------------------------------------------------------------
consensus_11261#0 AAA--------------------------------------------------------- 714
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 GCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGG 526
consensus_11261#2 ------------------------------------------------------------
consensus_11261#0 ------------------------------------------------------------
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 AGGGGCCATTCAACTCACGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTG 586
consensus_11261#2 ------------------------------------------------------------
consensus_11261#0 ------------------------------------------------------------
consensus_11261#3 ------------------------------------------------------------
consensus_11261#1 GATTATACAATTGAAAACATTACTCTTCTTTTGTCTTAGATAATGTTGGATTGAACAATT 646
consensus_11261#2 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||