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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1118 fasta sequence
[CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT-CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG-TTACCGTCTCATTGGCAATGTC-TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA]
[+] EMBL CB682195 [CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTCTTTTGGTATTTAAATGTTC ATTTGTAAT ]
[+] EMBL CB682921 [CGGACCTTATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGGTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTC TTTGG ]
[+] EMBL C27700 [ TTAATGATGGAGCACATCATTTTAATGATAGAGGGCATCCNTTCNATGATAGAGGGAATNACTTCNATGATAGAGGACATCANTTTAATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTAATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTAATGGTCCGTCCACCCCATTTAATTGTAGGCANCCATCGATTCC ]
[-] EMBL CB682922 [ GAATTTCTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGGTACACATGATCGAAGAACA ]
[+] EMBL BQ908362 [ GTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTC AACTTTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTAaaaaaaaaa ]
[-] EMBL CA760901 [ TGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAAGGGCTATATAATTNTGATCTGGTCTTTTCCTCGTTTNTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTACACATGATCGAAGAGCAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA]
consensusID : consensus_11336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence
[TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGACAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA-CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGAC-AAAGAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTAT-TC-TTACCCTA-CCGTTTACCGTCTCATTGCCAAT-TTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA]
[+] EMBL BM038460 [TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGACAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGAC AAAGAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTAT TC TTACCCTA CCGTTTACCGTCTCATTGCCAAT TTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA]
[+] EMBL AU222511 [ AGCCTCAGCTGCGAGTGGC AATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTNTCCGTTCATGTGCGGGCTTACCATGAAATNTCCTTGACAAAANAGATGGAACCGGCCCC NCTGTACATATGTATCTTAGTTCTTAGCNCTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAANAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTANCGGTTTACCGTCTCATTGGCAATGTTTTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11336#0 CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGA 60
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 TGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGG 120
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 ACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCC 180
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 ATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCC 240
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 TCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGG 300
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 CCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAG 360
consensus_11336#1 -----------------------------------TTGGAAGGGAAGGAGGGAAAGAACA 25
*** * * **** * *
consensus_11336#0 ACACAATCATGATAA-ACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTA 419
consensus_11336#1 CCAAATCCATGATAACACCACCTAGATGACTGGGA-CAGAGGAGCTTTCCACCTCATTTA 84
** * ******** ** *************** ************************
consensus_11336#0 CCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAA-TATATTTCGTTACTGGAGCTC 478
consensus_11336#1 CCTC--AACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTC 142
**** **** *********************** *** *********************
consensus_11336#0 GGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTT 538
consensus_11336#1 GGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTT 202
************************************************************
consensus_11336#0 GAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTT 598
consensus_11336#1 GA-CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTT 261
** *********************************************************
consensus_11336#0 GACAAAAGAGATGGAACCGGCCCCAC-TGTACATATGTATCTTAGTTCTTAGCACTGTTC 657
consensus_11336#1 GACAAA-GAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTC 320
****** ******************* *********************************
consensus_11336#0 TGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTA 717
consensus_11336#1 TGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTA 380
*************************** ********************************
consensus_11336#0 GTTACCCATAGATTATGTCGTTAGCCTAGCGGTTACCGTCTCATTGGCAATGTCTTTGGT 777
consensus_11336#1 GTTACCCATAGATTATTC--TTACCCTACCGTTTACCGTCTCATTGCCAATTTCTTTG-T 437
**************** *** **** ** ************** **** ****** *
consensus_11336#0 ATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTA 837
consensus_11336#1 ATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTA 497
********************* ****************************** *******
consensus_11336#0 GGGTTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTT 897
consensus_11336#1 GGTTTACACAAAAAAAAAA----------------------------------------- 516
** ******* * **
consensus_11336#0 GAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAG 957
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 GAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTAC 1017
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 AGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGA 1077
consensus_11336#1 ------------------------------------------------------------
consensus_11336#0 ATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA 1118
consensus_11336#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||