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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1496 fasta sequence
[GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCTCCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGCCACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGAGTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCATCGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTGCCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCCTGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTTCTGCCCGCCTGCCGTGGCTTTCTGGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA-GCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA-CACCAAGTTTACAATGTA-ACGGAGGATTATGAG-AAGCTGAGGGATGCTGTCAATAAGCTTGTTG-CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGA---AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGC-GTTGCCAGTTCATGTAGTGTACTTTC-AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCA-AGGAGAATTGCC-GCCGCTGTAGATTGAATTGAATGCTGGCTACCGATGATATCGTCAGAATGGCAATGGAATTGTGGTGAATCATCTTCAGAGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGTAGAGATTAGAGCTGGGGACAAGGGAATTGATGGCTTCTCTTTTGTGGCAAAAAAAA]
[+] EMBL AK069735 [GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCTCCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGCCACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGAGTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCATCGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTGCCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCCTGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTTCTGCCCGCCTGCCGTGGCTTTCTGGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA GCTCAAGAAATGTCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA CACCAAGTTTACAATGTA ACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGCAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCA AGGAGAATTGCC GCCGCTGTA ]
[+] EMBL CB650020 [GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCTCCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGCCACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGAGTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCATCGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTGCCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCCTGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTTCTGCCCGCCTGCCGTGGCTTTCTTGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAAGTGGCATCGAGGGAATAAGGAGCCGTAACCATG ]
[-] EMBL CB678305 [ TTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA GCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA CACCAAGTTTACAATGTA ACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG GTGATGGATTCACCAGCAGCAAGTTGCGGCCTTGGCAGA AGGAAACGATGGCTTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATGTAGATTTAGCCCGCCAATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCTCTGGCATGTGTTCCCCCTTACCTTCATTTTCAAGCTGTAATGTAAGACCAACAATAATTTGTATTCA AGGAGAATTGCC GCCGTTGTAGATTGAATTGAATGCTGGCTACCGATGATTTTGTAAGGGTGGCAATGGAATTGTGGT ]
[+] EMBL C28476 [ GGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAA GCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCA CACCAAGTTTACAATGTA ACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGA AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACANNCAGCGCTNCGGTGTGATCTAGATTTAGCCCGCCAATGGC TTTGCCAGTTCATGTAGTGTACTTTC AG AACTNACAGAAGTGTTGTATTT CAATCCGTCCGTCACAATAATGCACTTGCATGTCTT CCCCTTACCCTCATT ]
[+] EMBL AU091298 [ GAAAAGAGTAGAAGGCTCAAAGAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCACCACCAAGTTTACAATGAA ACGGAGGATTATGAGNAAGCTGAGGGATGCTGTCAATAAGCTTGTTGNTTGATGGATTCACCAGCAGCAAGTTNCGGCCTTCGCAGA AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGCNGTTGCCAGTTCATGTAGTGTACTTTCAAGAAACTGACANAAGTGTTGTATTNGCAATCCGTCNGTCACAATAATGCANTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCA AGGAGAATTGCCAGCCGCTGTAGATTGAATTGAATGCTGGCTACCNATGATATCGTCA AATGGCAATGGAATTGTGGTGAATCATCTTCAGAGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGTAGAGATTAGAGCTGGGGACAAGGGAATTGATGGCTTCTCTTTTGTGGCAAAAAAAA]
[+] EMBL BI798395 [ TCACAGGGTATGTTAGGATCTCA CACCAAGTTTAC ATGTATACGGAGGATTATGAG AAGCTGAGGGATGCTGTCAATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGCAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGATATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCC ATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAAC AC ATAATCTGAATCC AGGAGAATTGCC GCCGCTGTAGATTGAATTGAATGCTGGCTACCGATGATATCGTCAAAAa ]
[+] EMBL BM421637 [ AGGATTATGAG AAGCTGAGGGATGCTGTCCATAAGCTTGTTG CTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGA AGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGATATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCCATGGC GTTGCCAGTTCATGTAGTGTACTTTC AGAAACTGACAGAAGTGTTGTATTTGC ATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAAC ACCATAATCTGAATCCACAGGAGAATTGCC GCCGCTGTAaaaaaaaaa ]
consensusID : consensus_11343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[GATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGTCAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGGGTTGTATTTGCAATCCGTCCGTCCCAATAAAAAAAAAAAAGA]
[-] EMBL CB650021 [GATAGCCTCCCAGCTCCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGATTGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCGATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGGTAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAGCATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAGAATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAGAAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGTTAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGTCAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCCAATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGGGTTGTATTTGCAATCCGTCCGTCCCAATAAAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11343#0 GCACGCCGCGTGGAGCTTCGCCGAGGGGAGGTTCTCCCGCGGGGACGCCGTGCTCATGCT 60
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 CCACTACGCGTACGGCGCCGTCAAGAAGTCCATCCACGCCTACGTCGCCCGCGCCGGGGC 120
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 CACCGTCGTCGAGGTGCCGCTCCCGTTCCCCGTCGCGTCCGCGGACGCCATCATCGCCGA 180
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 GTTCCGCGCCGCGCTCGATGTGGCCAAGGCCGGGGGGCGCAAGGTCCGCCTCGCGGTCAT 240
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 CGACCACATCACCTCCATGCCTAGCGTTGTCATCCCGGTGAAGGAGCTCGTTGCCATCTG 300
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 CCGAGAAGAGGGTGTCGATAAGGTGTTTATAGATGCCGCGCACTCCATTGGGCAGGTCCC 360
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 TGTTGATGTGCGCGATATTGGGGCCGATTTTTACACCAGCAATCTCCACAAGTGGTTCTT 420
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 CTGCCCGCCTGCCGTGGCTTTCTGGCACACCCGAAAGGATGATCCGATAGCCTCCCAGCT 480
consensus_11343#1 ---------------------------------------------GATAGCCTCCCAGCT 15
***************
consensus_11343#0 CCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGAT 540
consensus_11343#1 CCACCATCCTGTGGTGTCGCACGAGTACGGCAATGGGCTTCCCATGGAGAGTGGATGGAT 75
************************************************************
consensus_11343#0 TGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCG 600
consensus_11343#1 TGGGACAAGGGATTACAGTGCACAGCTTGTAGTGCCTGAATCTATTGATTTTGTTAACCG 135
************************************************************
consensus_11343#0 ATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGG 660
consensus_11343#1 ATTTGAAGGTGGCATCGAGGGAATAAGGAGCCGTAACCATGAAAAAGTGATCGAGATGGG 195
************************************************************
consensus_11343#0 TAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAG 720
consensus_11343#1 TAAGATGCTTGCTGAGGCATGGGGGACTTTTCTTGGCACACCACCAGAGCTGTGCGGTAG 255
************************************************************
consensus_11343#0 CATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAG 780
consensus_11343#1 CATGGTTATGGTTGGTCTTCCCGGTTGCCTTGGTGTTGAAAGTGATGATGATGTGATGAG 315
************************************************************
consensus_11343#0 AATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAG 840
consensus_11343#1 AATGAGAACAATGTTGAGGAAGGATTTTATGGTGGAGGTGCCAATATACTACAATTCGAG 375
************************************************************
consensus_11343#0 AAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGT 900
consensus_11343#1 AAGAGTAGAAGCTCAAGAAATGGCAAAGGATAAGAATGGTGATGCAGTCACAGGGTATGT 435
************************************************************
consensus_11343#0 TAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGT 960
consensus_11343#1 TAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGT 495
************************************************************
consensus_11343#0 CAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAAC 1020
consensus_11343#1 CAATAAGCTTGTTGCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGGAAAC 555
************************************************************
consensus_11343#0 GATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGAC 1080
consensus_11343#1 GATGGCCTGATGAACATTGCAGCCAACCAGCACTCTGTTGGAAGTTATGTTGTGGCCGAC 615
************************************************************
consensus_11343#0 TACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCC 1140
consensus_11343#1 TACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGATTTAGCCCGCC 675
************************************************************
consensus_11343#0 AATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGTGTTGTATTTGCA 1200
consensus_11343#1 AATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGGGTTGTATTTGCA 735
*********************************************** ************
consensus_11343#0 ATCCGTCCGTCACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGT 1260
consensus_11343#1 ATCCGTCCGTCCCAATAAAAAAAAAAAAGA------------------------------ 765
*********** ****** * *
consensus_11343#0 AATGTAAGAACAACAATAATCTGAATCCAAGGAGAATTGCCGCCGCTGTAGATTGAATTG 1320
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 AATGCTGGCTACCGATGATATCGTCAGAATGGCAATGGAATTGTGGTGAATCATCTTCAG 1380
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 AGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGT 1440
consensus_11343#1 ------------------------------------------------------------
consensus_11343#0 AGAGATTAGAGCTGGGGACAAGGGAATTGATGGCTTCTCTTTTGTGGCAAAAAAAA 1496
consensus_11343#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||