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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 940 fasta sequence
[AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT-GGAAATTTGATTACC-GGGATGGGGCTTGGGAC-GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT-GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG-AGACATTTAG-TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG-AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG-CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGG-CCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATA-GTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATGCTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU183212 [AACAGNGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGATAGGAAATTTGATTACCAGGGATGGGGCTTGGGACAGGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAG TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGG ]
[+] EMBL C74767 [ ACAGTCCCAGCTCACCCNNNCNTAGTCAATCACCTCACGTGNNAAGTTATNGANCGATCAAAGGTTGTNATTGAT GGNNATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTAGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTGAAGACATTTA ]
[+] EMBL C74766 [ CAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT GGAAATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGG GTNGGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAG TTGTGCTACAAGTATATTGCAGTAGCTACGCTTG AGACNAAGGTCACCGGTGCTCTTCG CTTGCTG TTTATGGG CTTC ACTC TCTTGAG C AC ACATA TCC CTG TGCG CA TGG CA CTGG CGG AATCA TCC CTATA TTG TGGGA GG CCATTA ]
[+] EMBL AU065630 [ AGTCAATCAGCTCACGTGTGAAGTTATTGATCGATCAAAGGTTGTGATTGAT GGAAATTTGATTACC GGGATGGGGCTTGGGAC GGTCATTGATTTTTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGT GGCAAATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGTG AGACATTTAGTTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAAGAC AAGGTCACCGGTGCTCTTCGTCTTACTG TTTATGGGNCCTACAACT ]
[+] EMBL CA765780 [ ATGGCATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATACGCAGACGCG AGACATTTAG TTGTGCTTCAAGTATATTGCAGTAGCTACGCTTG AGACAAAGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGG CCTTCAACTCTTCTTGAGACAACAACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTGGGATGGACCATTTACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTTGGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGATGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCTTCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTAGAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAATTTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGCTCGATAGGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGT ]
[+] EMBL AU030159 [ TTCAGATNTTTTTTCAGCAATTTTGTTNCCTGAATTCTGAAGTTAACTGGCAATNTAGTACAATGGATTCCCTCAATTTGCTCGATA GTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAANAAACATGCTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB965594 [ TGGCAATGTAGTACCATGGATTCCCTCCATTTGCTCGATA GTTGATCAGATAATTTGCTCGAT ]
consensusID : consensus_11443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 135 fasta sequence
[CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA]
[+] EMBL CF301155 [CTGGACTGAAGGAGTAGAAAAATTTGTTCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAA ]
[-] EMBL CF301154 [ GATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATGCTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11443#0 AACAGTGACAGCTCATCCTTCCATAGTCAATCAGCTCACGTGTGAAGTTATTGATCGATC 60
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 AAAGGTTGTGATTGATGGAAATTTGATTACCGGGATGGGGCTTGGGACGGTCATTGATTT 120
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 TTCGCTGGCTATTATTAAAAAATTCTTTGGCCATGGACGAGCCAAAGGCGTGGCAAATGG 180
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 CATGGTTTTTGAGTATCCCAAGAGCTGAAACACCTAAAATATATCTGGCACTCTGTAATA 240
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 CGCAGACGTGAGACATTTAGTTGTGCTACAAGTATATTGCAGTAGCTACGCTTGAGACAA 300
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 AGGTCACCGGTGCTCTTCGTCTTGCTGTTTTATGGGCCTTCAACTCTTCTTGAGACAACA 360
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 ACATATTCCTCTGTTGCGTCATTGGACATCTGGACGGAAATCATTCCACTATATTTGTTG 420
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 GGATGGCCATTAACATTGAGAAGATTCGGTGGAGGTCAATTCATCTCGATATGATCTGTT 480
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 GGCATATTACGACACAGGTTGATTACTAACTGGATCTAAATATTGCAACTGATCAAGTGA 540
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 TGATAACCTTCTGCTTGACGGATGCGCTTTTAGAAGAAACCCATCATGTTCAGTGGGGCT 600
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 TCCAAGGACCTGAAGCCCTTTCGATGTTGCTCTTATGCCCAGCTATCCAATCTGATAGTA 660
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 GAGACTTCCAGCCTGCGACAAACCAATTTAGCTTCAAAATTCAGATCTTTTTTCAGCAAT 720
consensus_11443#1 ------------------------------------------------------------
consensus_11443#0 TTTGTTGCCTGAATTCTGAAGTTAACTGGCAATGTAGTACAATGGATTCCCTCAATTTGC 780
consensus_11443#1 ---------------------------------CTGGACTGAAGGAGTAGAAAAATTTGT 27
* * * *** * ******
consensus_11443#0 TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGGTGCAANAAACATG 840
consensus_11443#1 TCGATAGTTGATCAGATAATTTGCTCGATAGTTGATCAAATATTTGTTGCAACAAACATG 87
********************************************** ***** *******
consensus_11443#0 CTCACATAGNGTATCCACTTCCTTTTTTGCCCNGTTAAAAAAAAAAAAAAAAAAAAAAAA 900
consensus_11443#1 CTCACATAGCGTATCCACTTCCTTTTTTGCCCCGTTAAAAAAAAAAAA------------ 135
********* ********************** ***************
consensus_11443#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 940
consensus_11443#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||