cluster # 11444

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Oryza sativa
cluster # 11444 cluster # 11444 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11444#0 length = 678 sequences # 1

consensus_11444#1 length = 616 sequences # 7
consensus_11444#2 length = 441 sequences # 1

consensusID : consensus_11444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACATTAATTAGTGTGTTCTTCATCATCGCCGGCGATCGAGCGAAGGCGACGATGTTTTGCTTGCTGCATCGGCTGTTCCCGTTCCTGGTTGGCACGGCCGTCGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGACTCGCCGACCGCGGCGTCGACGCCGCCAAGCAATACGAGGAGGCCTACCGCAAGAAGCCCTCCTCCGGCGCCGGCGCCGGCGGCGGGAGCAAGAAGAGGATGAACAAGGCCGTGGAGATCGACGACGATGAAGAGTAACTAAGTTACTGATAGCTAGAGATGCAAGCAGGTCGACCTACGATGAACCGAACCCACTTATAGGTCAAATAAATAACCCGTGGATTTTCGGGTCGTGGCTCGGCTTGTCACATCTATAGATGCAAGTGAATTAGTGGATAATCCGCATAGTTTTGCTTATAAACAGGTTCGTGGGTTGGTCCACTTGCATTCCTACTGATGCTGGCTCCTACCCCATCCAAGCTGCAAGGAGTATATATGCTCTACAAAAACGAGCAACTAGTGTATAAGTTAAATTGTTTAGCGTATGTATGTACAAACTAACTGCTATATTCGTCTCAAAATATAACAACGTGAGACTGTCCAAAT]

[+] EMBL AK063249             [CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACATTAATTAGTGTGTTCTTCATCATCGCCGGCGATCGAGCGAAGGCGACGATGTTTTGCTTGCTGCATCGGCTGTTCCCGTTCCTGGTTGGCACGGCCGTCGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGACTCGCCGACCGCGGCGTCGACGCCGCCAAGCAATACGAGGAGGCCTACCGCAAGAAGCCCTCCTCCGGCGCCGGCGCCGGCGGCGGGAGCAAGAAGAGGATGAACAAGGCCGTGGAGATCGACGACGATGAAGAGTAACTAAGTTACTGATAGCTAGAGATGCAAGCAGGTCGACCTACGATGAACCGAACCCACTTATAGGTCAAATAAATAACCCGTGGATTTTCGGGTCGTGGCTCGGCTTGTCACATCTATAGATGCAAGTGAATTAGTGGATAATCCGCATAGTTTTGCTTATAAACAGGTTCGTGGGTTGGTCCACTTGCATTCCTACTGATGCTGGCTCCTACCCCATCCAAGCTGCAAGGAGTATATATGCTCTACAAAAACGAGCAACTAGTGTATAAGTTAAATTGTTTAGCGTATGTATGTACAAACTAACTGCTATATTCGTCTCAAAATATAACAACGTGAGACTGTCCAAAT]




>consensus_11444#0
CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACATTAATTAGTGTG
TTCTTCATCATCGCCGGCGATCGAGCGAAGGCGACGATGTTTTGCTTGCTGCATCGGCTG
TTCCCGTTCCTGGTTGGCACGGCCGTCGGCGTGTACGCGGCGCAGAATTACAAGGTCCCC
AACCTCCGGGGACTCGCCGACCGCGGCGTCGACGCCGCCAAGCAATACGAGGAGGCCTAC
CGCAAGAAGCCCTCCTCCGGCGCCGGCGCCGGCGGCGGGAGCAAGAAGAGGATGAACAAG
GCCGTGGAGATCGACGACGATGAAGAGTAACTAAGTTACTGATAGCTAGAGATGCAAGCA
GGTCGACCTACGATGAACCGAACCCACTTATAGGTCAAATAAATAACCCGTGGATTTTCG
GGTCGTGGCTCGGCTTGTCACATCTATAGATGCAAGTGAATTAGTGGATAATCCGCATAG
TTTTGCTTATAAACAGGTTCGTGGGTTGGTCCACTTGCATTCCTACTGATGCTGGCTCCT
ACCCCATCCAAGCTGCAAGGAGTATATATGCTCTACAAAAACGAGCAACTAGTGTATAAG
TTAAATTGTTTAGCGTATGTATGTACAAACTAACTGCTATATTCGTCTCAAAATATAACA
ACGTGAGACTGTCCAAAT

consensusID : consensus_11444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 616
fasta sequence

                              [ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAGAACGGATATATTAATAAAAAAAAAGGACGAAAAATTGATCANNAAAAAAAAAAAAAAAA]

[+] EMBL OSC109941            [ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACG CGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCG                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU100647             [ TCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTNCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAGAACGGATATATTAATAAAAAAA                                     ]
[+] EMBL AU063724             [   TGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCT                                                                                                                                                                                                    ]
[+] EMBL AU063653             [   TGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTNTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACACGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGNCGACCGCGGCGTCGACG CGCAAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTNCGACGGCGG GGCGGCGGCGGGAGCAGGANGAAGCTGAACAAGACCGTCGAGATCGACGACGACGANGAGTAAATT                                                                                                                                                                                                                           ]
[+] EMBL D42586               [                CACACNCACTGACACANACATATATACTTACATNTAAATACAGATANATATAGGTGGNTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGGTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGNTCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU182168             [                                                                                                 TTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCNCGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAAaaa                                                                                              ]
[+] EMBL CF318810             [                                                                                                                                                                                                                                                                                                                                                                                                                  ATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAGAACGGATATATTAATAAAAATAAAGGACGAAAAATTGATCANNAAAAAAAAAAAAAAAA]




>consensus_11444#1
ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGA
TATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGT
TGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCG
GCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAA
GGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGA
GGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAA
CAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCT
CACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATT
GGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAA
ATTAAAAAATTAAAAAGAACGGATATATTAATAAAAAAAAAGGACGAAAAATTGATCANN
AAAAAAAAAAAAAAAA

consensusID : consensus_11444#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [TAGCGTATGTGTTGTTTGTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATCGATTCCNCGATGGGGTTGCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCGGCGGGTGGGCGTGTACNCGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGCCGACCGNGGGCGTGACGCCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTCCCCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAAAAA]

[+] EMBL AU172381             [TAGCGTATGTGTTGTTTGTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATCGATTCCNCGATGGGGTTGCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCGGCGGGTGGGCGTGTACNCGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGCCGACCGNGGGCGTGACGCCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTCCCCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAAAAA]




>consensus_11444#2
TAGCGTATGTGTTGTTTGTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATC
GATTCCNCGATGGGGTTGCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCG
GCGGGTGGGCGTGTACNCGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGC
CGACCGNGGGCGTGACGCCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTC
CCCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGA
CGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTA
TGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACAC
GTAAAACTTATACGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11444#1      ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGA 60
consensus_11444#2      ------------------------------------------------------------
consensus_11444#0      ------------------------------------------------------------
                                                                                   

consensus_11444#1      TATATATAGGTGGTTAGCTACC-TGTATAGTTTATACATTAGCTAGCGTATGTGTTGTT- 118
consensus_11444#2      -------------------------------------------TAGCGTATGTGTTGTTT 17
consensus_11444#0      ----CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACAT-TAATTA 55
                                                                     *  *  * *  ** 

consensus_11444#1      -GTTGATCATCG-ATCGCCGGC--GACGAC--AGGGAGAGATCGAT-CCACGATGGG-TT 170
consensus_11444#2      GTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATCGATTCCNCGATGGGGTT 77
consensus_11444#0      GTGTGTTCTTC--ATCATCGCC--GGCGATCGAGCGAAGG-------CGACGATGTT-TT 103
                          ** ** **  ***  **    * **    **  *  *       *  *****   **

consensus_11444#1      GCC-TGCTGCGGC-GGCTGTTCCCG--TTCCTGGTCGGCAC-GGCGG-TGGGCGTGTACG 224
consensus_11444#2      GCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCGGCGGGTGGGCGTGTACN 137
consensus_11444#0      GCT-TGCTGCATC-GGCTGTTCCCG--TTCCTGGTTGGCAC-GGCCG-TCGGCGTGTACG 157
                       **  ******  * **********   ******** *** * *** * * ********* 

consensus_11444#1      CGGCGCAGAA-TTACAAGGTCCCC-AACCTCCGGGGCC-TCGCCGACCGCGGCGTCGACG 281
consensus_11444#2      CGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGCCGACCGNGGGCGTGACG 197
consensus_11444#0      CGGCGCAGAA-TTACAAGGTCCCC-AACCTCCGGGGAC-TCGCCGACCGCGGCGTCGACG 214
                       ******* ** ** ********** *********** * ********** **    ****

consensus_11444#1      CCG--CCAAGCACTACGAGGAGGCCT-ACCGCAAGAAGCCCTCCGCCGGCGGCGGCG--- 335
consensus_11444#2      CCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTCCCCCGGCGGCGGCG--- 254
consensus_11444#0      CCG--CCAAGCAATACGAGGAGGCCT-ACCGCAAGAAGCCCTCCTCCGGCGCCGGCGCCG 271
                       **   ******* *************  **************** ****** *****   

consensus_11444#1      GCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAA 395
consensus_11444#2      GCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAA 314
consensus_11444#0      GCGGCGGGAGCAAGAAGAGGATGAACAAGGCCGTGGAGATCGACGACGATGAAGAGTAAC 331
                       ************ ***** ********** **** ************** ** ****** 

consensus_11444#1      TTAGTTGATACT-GCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGA---G 451
consensus_11444#2      TTAGTTGATACT-GCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGA---G 370
consensus_11444#0      TAAGTTACTGATAGCTAGAGAT-GCAAGCAGGTCGACCTACGATGAACCGAACCCACTTA 390
                       * ****  *  * ***** * * **   *  **      *   *  *   ** * *    

consensus_11444#1      CAGCTAGTGTGTATGATATGTAAATTATTGGAATGT-----------TCTTATGTGTACA 500
consensus_11444#2      CAGCTAGTGTGTATGATATGTAAATTATTGGAATGT-----------TCTTATGTGTACA 419
consensus_11444#0      TAGGTCAAATAAATAACCCGTGGATTTTCGGGTCGTGGCTCGGCTTGTCACATCTATAGA 450
                        ** *    *  ** *   **  *** * **   **           **  ** * ** *

consensus_11444#1      CGTAA---AACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAG 557
consensus_11444#2      CGTAA---AACTTATACGTAAAAAA----------------------------------- 441
consensus_11444#0      TGCAAGTGAATTAGTGGATAATCCGCATA-GTTTTGCTTATAAACAGGTTCGTGGGTTGG 509
                        * **   ** *  *   ***                                       

consensus_11444#1      AACGGATATATTAATAAAAAAAAAGGACGAAAAATTGATCANNAAAAAAAAAAAAAAAA- 616
consensus_11444#2      ------------------------------------------------------------
consensus_11444#0      TCCACTTGCATTCCTACTGATGCTGGCTCCTACCCCATCCAAGCTGCAAGGAGTATATAT 569
                                                                                   

consensus_11444#1      ------------------------------------------------------------
consensus_11444#2      ------------------------------------------------------------
consensus_11444#0      GCTCTACAAAAACGAGCAACTAGTGTATAAGTTAAATTGTTTAGCGTATGTATGTACAAA 629
                                                                                   

consensus_11444#1      -------------------------------------------------
consensus_11444#2      -------------------------------------------------
consensus_11444#0      CTAACTGCTATATTCGTCTCAAAATATAACAACGTGAGACTGTCCAAAT 678