cluster # 11446

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Oryza sativa
cluster # 11446 cluster # 11446 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11446#0 length = 769 sequences # 6
consensus_11446#1 length = 334 sequences # 1

consensus_11446#2 length = 331 sequences # 1
consensus_11446#3 length = 203 sequences # 1

consensusID : consensus_11446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 769
fasta sequence

                              [TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC-CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTATTGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG]

[+] EMBL AU184871             [TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU078360             [ GGTGAGAGCGGGAGTNGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACNGCTACCCGGCGCA  CGCNACCCCGCGGGGTACNCGTACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB653346             [   TGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATG                                                                                                                                                        ]
[+] EMBL AU184865             [                                                                                                                                                                                                                                                                            CGTACCCGGCGGCGAACNCCGGGAGGCCTGGCCGCANCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCNCGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAAaaaaaaa                                                                                                                                                   ]
[+] EMBL AU070724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCNTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGNAAATATATAAATATGATTTGGNATGCGTATTGTCTAAAAAAAAAA                                                                                                                                    ]
[+] EMBL AK058770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTATTGTCTAAATCGTTGTGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG]




>consensus_11446#0
TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCG
CCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAG
CCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACG
ACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACC
CGGCGCAGCCGCCCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCC
GCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCG
GCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCG
GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG
CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT
GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT
AAATATGATTTGGAATGCGTATTGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTACTT
TTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAA
TTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG

consensusID : consensus_11446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA]

[+] EMBL OSA298285            [TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA]




>consensus_11446#1
TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATAT
ATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACG
TAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATC
GGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGT
TGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAG
GACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA

consensusID : consensus_11446#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA]

[+] EMBL AU095626             [GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA]




>consensus_11446#2
GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGG
CGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTT
ACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCG
CACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCG
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA

consensusID : consensus_11446#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA]

[+] EMBL BQ907259             [CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA]




>consensus_11446#3
CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGC
AGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAAT
GCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGA
ATGCGTATTGTCTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11446#0      TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCG 60
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      CCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAG 120
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      CCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACG 180
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      ACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACC 240
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      --------------------------------TTTTCGTCCGCAATATTTTGTTTGATTT 28
                                                                                   

consensus_11446#0      CGGCGCAGCCGCCCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCC 300
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      TATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAA 88
                                                                                   

consensus_11446#0      GCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCG 360
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      ------------------------------------------------------------
consensus_11446#1      AACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCAC 148
                                                                                   

consensus_11446#0      GCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCG 420
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      -------------------GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCG 41
consensus_11446#1      AACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTG 208
                                                                                   

consensus_11446#0      GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG 480
consensus_11446#3      -----------------------------------CCGAACACGAGCAGATAAGCAACAA 25
consensus_11446#2      GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG 101
consensus_11446#1      ACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTG 268
                                                                * ***  * *    * *  

consensus_11446#0      CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 540
consensus_11446#3      CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 85
consensus_11446#2      CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 161
consensus_11446#1      CTCGTGTTC-TATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTT 327
                       ********* ************************  ***  *******************

consensus_11446#0      GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 600
consensus_11446#3      GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 145
consensus_11446#2      GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 221
consensus_11446#1      GCTCTTA----------------------------------------------------- 334
                       *******                                                     

consensus_11446#0      AAATATG-ATTTGGAATGCGTAT-TGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTAC 658
consensus_11446#3      AAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA-- 203
consensus_11446#2      AAATATG-ATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 280
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      TTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCA 718
consensus_11446#3      ------------------------------------------------------------
consensus_11446#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA--------- 331
consensus_11446#1      ------------------------------------------------------------
                                                                                   

consensus_11446#0      AATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG 769
consensus_11446#3      ---------------------------------------------------
consensus_11446#2      ---------------------------------------------------
consensus_11446#1      ---------------------------------------------------