|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1739 fasta sequence
[TCCTCTTTTATCCATCAAGTCAGCAGTTTTCGGTGGCTGTGAATGGATGCCAATACACTGTTCCTTCAATAACCGCTAAAACAGGTCTATACCTTGAAGGATCAGTGTCGCCTGCAATTTCTGATGTTGACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCAT-CAGCAGTTGCTATT-GATCT-CAATT-CT-GGTGAGTCTAGAGA-GGTTGAATTCCGT-GCAACTCGTGTTGCCTACAGTGCCATGGGTTCTGTAACCCTGCTGACT-GGCCAACCAAAAGA-GGGAGT-ATTTGTTGAAGCAAGATCTGAAT-CAA-GAGGTTATTATGAGGAAGCTACTACTGATCCTTTTGGTAGGTTTCGCCTTAGAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACATCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATGTGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTTGAGTCAGAG-ATAGT-TGAAGTTGACTTGGACAAGCAACCTCAGATT-CATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA-CAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC-TGCGGCTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAA-GAGGGCGTGAGGCATAAATTAGCTTCAG-ATT-AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCATGTT]
[+] EMBL AU056143 [TCCTCTTTTATCCATCAAGTCAGCAGTTTTCGGTGGCTGTGAATGGATGCCAATACACTGTTCCTTCAATAACCGCTAAAACAGGTCTATACCTTGAAGGATCAGTGTCGCCTGCAATTTCTGATGTTGACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGC TTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATNCACTCCATCCAGCAGTTGCTATTGGATCTCCAATTCCTGGGTGAGTCTAGAGAGGGTTGAATTCCGTGGCAACTCGTGTTGCCTACAGTGCCATGGGGTCTGTAA CCTGCTGACTGGGCCAACCAAAAGAGGGGAGTAATTGGTTGAAGCAAGATCTGAATCCAAGGAGGGTATTATnga ]
[+] EMBL AK058273 [ ACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCAT CAGCAGTTGCTATT GATCT CAATT CT GGTGAGTCTAGAGA GGTTGAATTCCGT GCAACTCGTGTTGCCTACAGTGCCATGGGTTCTGTAACCCTGCTGACT GGCCAACCAAAAGA GGGAGT ATTTGTTGAAGCAAGATCTGAAT CAA GAGGTTATTATGAGGAAGCTACTACTGATCCTTTTGGTAGGTTTCGCCTTAGAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACATCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATGTGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTTGAGTCAGAG ATAGT TGAAGTTGACTTGGACAAGCAACCTCAGATT CATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA CAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC TGCGGCTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAA GAGGGCGTGAGGCATAAATTAGCTTCAG ATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCATGTT]
[+] EMBL CB681013 [ AAGTATGCTTCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCAT CAGCAGTTGCTATT GATCT CAATT CT GGTGAGTCTAGAGA GGTTGAATTCCGT GCAACTCGTGTTGCCTACAGTGCCATGGGTTCTGTAACCCTGCTGACT GGCCAACCAAAAGA GGGAGT ATTTGTTGAAGCAAGATCTGAAT CAA GAGGTTATTATGAGGAAGCTACTACTGATTCTTTTGGTAGGTTTCGCCTTAGAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGAC ]
[+] EMBL CA765154 [ ATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACATCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATGTGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTTGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTTGAGTCAGAG ATAGTNTGAAGTTGACTTGGACAAGCAACCTCAGATT CATGTTGCTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA CAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCTGTGATTGCATTGGTCATCAGCATGCCAAGGTTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC TGCGGCTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAAGGAGGGCGTGAGGCATAAATTAGCTTCAG ATTAAGGTGTTGAAAAAACGGGTACTTACAGGTGATCACGTCAGGAGTAGAAAATAGCCGNTTCTTTGCATTTAANGGGTAATTTTGCAGATAAAAANTGGCAGTCGATATTTATTAACGACTACCAATTTTGATGNCCATGg ]
[+] EMBL CF324738 [ TTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTCGAGTCAGAGCATAGT TGAAGTTGA ]
[+] EMBL AU056144 [ cCCTCAGATTCCATGTTGGTCCTCTTAAATATAAACCCGAAGANCGACATCACAAACCAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTNCCGTGATTCCATTGGTCATCAGCATGCCAAGGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCNTGC CTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAA GAGGGCGTGAGGCATAAATTAGCTTCAG ATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCAaaaa]
[+] EMBL AU063235 [ TAAATTAGCTTCAG ATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTNCTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAAaaa ]
[+] EMBL AU063140 [ TAAATTAGCTTCAGTATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGGCTTGTACTTTGGCATTAA ]
consensusID : consensus_11478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence
[TTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF316428 [TTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11478#0 TCCTCTTTTATCCATCAAGTCAGCAGTTTTCGGTGGCTGTGAATGGATGCCAATACACTG 60
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TTCCTTCAATAACCGCTAAAACAGGTCTATACCTTGAAGGATCAGTGTCGCCTGCAATTT 120
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 CTGATGTTGACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAA 180
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 GGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGT 240
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 ATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTG 300
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 GCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAAC 360
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 AAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAA 420
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 ATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTT 480
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCATCAGCAGTTGCTATTGATC 540
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TCAATTCTGGTGAGTCTAGAGAGGTTGAATTCCGTGCAACTCGTGTTGCCTACAGTGCCA 600
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TGGGTTCTGTAACCCTGCTGACTGGCCAACCAAAAGAGGGAGTATTTGTTGAAGCAAGAT 660
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 CTGAATCAAGAGGTTATTATGAGGAAGCTACTACTGATCCTTTTGGTAGGTTTCGCCTTA 720
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 GAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGT 780
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACA 840
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATG 900
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTG 960
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 CAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTAC 1020
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 AGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCC 1080
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 ATAGATTTGAGTCAGAGATAGTTGAAGTTGACTTGGACAAGCAACCTCAGATTCATGTTG 1140
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 GTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGGAATTAACTCCAGCCCCTG 1200
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGGCTAA 1260
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 AAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGCGGCTGCGCCGATAA 1320
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 AAAAGGAGCCAAGAAAGACAATCATGAGAAAGAGGGCGTGAGGCATAAATTAGCTTCAGA 1380
consensus_11478#1 ------------------------------------------------------------
consensus_11478#0 TTAGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTT 1440
consensus_11478#1 -----------------------------------------------------------T 1
*
consensus_11478#0 TCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGAC 1500
consensus_11478#1 TCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGAC 61
************************************************************
consensus_11478#0 TACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTG 1560
consensus_11478#1 TACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTG 121
************************************************************
consensus_11478#0 TGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCA 1620
consensus_11478#1 TGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCAAAAAAAAAAAAAAAAA 181
******************************************* * * *
consensus_11478#0 GTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACAC 1680
consensus_11478#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 210
* * * *
consensus_11478#0 GTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCATGTT 1739
consensus_11478#1 -----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||